Os03g0803000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Longin domain containing protein.
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Os03g0803000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Longin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.53 | 0.295 | 14.9 | 0.166 | 0.696 | 0.747 | 0.171 | -1.01 | 0.477 | 1.21 | 21.3 | 2068 | -- | -- |
| 40.55 | 0.297 | 14.8 | 0.261 | 0.701 | 1.09 | 0.173 | -- | 0.533 | 1.08 | 19.2 | 2748 | -- | -- |
| 39.65 | 0.293 | 14.9 | 0.166 | 0.696 | 0.748 | -- | -0.988 | 0.478 | 1.23 | 21.3 | 2067 | -- | -- |
| 40.56 | 0.297 | 14.8 | 0.253 | 0.702 | 1.11 | -- | -- | 0.54 | 0.953 | 19.1 | 2796 | -- | -- |
| 67.26 | 0.382 | 14.9 | 0.143 | -- | 0.868 | -- | -0.862 | 0.452 | -- | 21.31 | 2463 | -- | -- |
| 60.18 | 0.364 | 14.8 | 0.804 | 0.734 | -- | 0.0787 | -- | 0.772 | 1.07 | -- | -- | -- | -- |
| 60.21 | 0.363 | 14.8 | 0.801 | 0.734 | -- | -- | -- | 0.771 | 1.08 | -- | -- | -- | -- |
| 68.06 | 0.384 | 14.8 | 0.248 | -- | 1.2 | -- | -- | 0.537 | -- | 19.19 | 2406 | -- | -- |
| 42 | 0.302 | 14.9 | -- | 0.708 | 1.18 | -- | -- | 0.503 | 0.989 | 19.1 | 2817 | -- | -- |
| 93.65 | 0.452 | 14.8 | 0.829 | -- | -- | -- | -- | 0.786 | -- | -- | -- | -- | -- |
| 77.13 | 0.411 | 14.8 | -- | 0.747 | -- | -- | -- | 0.682 | 1.13 | -- | -- | -- | -- |
| 69.35 | 0.388 | 14.8 | -- | -- | 1.28 | -- | -- | 0.519 | -- | 19.1 | 2411 | -- | -- |
| 111.78 | 0.493 | 14.8 | -- | -- | -- | -- | -- | 0.694 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 37.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 4 | 38.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 6 | 38.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 7 | 38.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 13 | 38.81 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 39 | 38.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 61 | 39.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 64 | 39.06 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 68 | 39.08 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 73 | 39.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 85 | 39.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 153 | 39.33 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 191 | 39.42 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 192 | 39.42 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 299 | 39.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 351 | 39.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 423 | 39.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 579 | 40.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 617 | 40.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 639 | 40.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 17 |
| 768 | 40.50 | humidity | 90 | 14400 | > th | dose dependent | sin | 6 | NA |
| 769 | 40.50 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 795 | 40.54 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 809 | 40.55 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 18 |
| 828 | 40.58 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 865 | 40.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |