Os12g0639800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Vesicle-associated membrane protein 722 (AtVAMP722) (Synaptobrevin- related protein 1).
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Os12g0639800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Vesicle-associated membrane protein 722 (AtVAMP722) (Synaptobrevin- related protein 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.72 | 0.381 | 10.7 | 1.35 | 0.307 | -0.828 | -1.02 | -0.814 | 0.243 | 23.3 | 20.52 | 10 | -- | -- |
| 65.99 | 0.381 | 10.7 | 1.49 | 0.3 | -0.897 | -0.818 | -- | 0.285 | 23 | 20.99 | 9 | -- | -- |
| 68.61 | 0.386 | 10.7 | 1.58 | 0.306 | -0.914 | -- | 0.328 | 0.304 | 22.4 | 21.6 | 2 | -- | -- |
| 68.7 | 0.386 | 10.7 | 1.53 | 0.308 | -0.891 | -- | -- | 0.288 | 22.5 | 21.55 | 2 | -- | -- |
| 73.55 | 0.399 | 10.7 | 1.64 | -- | -1.09 | -- | 0.437 | 0.341 | -- | 21 | 2 | -- | -- |
| 79.06 | 0.417 | 10.7 | 1.32 | 0.56 | -- | -0.687 | -- | 0.137 | 0.502 | -- | -- | -- | -- |
| 81.08 | 0.422 | 10.7 | 1.35 | 0.562 | -- | -- | -- | 0.14 | 0.579 | -- | -- | -- | -- |
| 73.73 | 0.4 | 10.7 | 1.57 | -- | -1.07 | -- | -- | 0.32 | -- | 21 | 2 | -- | -- |
| 124.73 | 0.523 | 10.8 | -- | 0.456 | -0.547 | -- | -- | -0.00808 | 24 | 26.7 | 2 | -- | -- |
| 100.88 | 0.469 | 10.7 | 1.37 | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
| 128.94 | 0.531 | 10.8 | -- | 0.582 | -- | -- | -- | -0.0102 | 0.691 | -- | -- | -- | -- |
| 134.45 | 0.542 | 10.7 | -- | -- | -0.801 | -- | -- | 0.064 | -- | 24.32 | 2 | -- | -- |
| 150.18 | 0.572 | 10.8 | -- | -- | -- | -- | -- | -0.00219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.66 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 19 |
| 2 | 60.69 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 23 | 61.62 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 37 | 61.65 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 40 | 61.77 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 41 | 61.83 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 42 | 61.83 | temperature | 25.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 43 | 61.84 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 47 | 61.96 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 48 | 61.96 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 49 | 61.97 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 55 | 62.07 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 58 | 62.09 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 65 | 62.17 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 66 | 62.17 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 8 |
| 67 | 62.17 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 73 | 62.24 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 75 | 62.28 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 80 | 62.42 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 87 | 62.52 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 88 | 62.53 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 113 | 62.60 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 129 | 62.66 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 140 | 62.69 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 178 | 62.84 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 3 |
| 227 | 63.03 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 243 | 63.07 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 258 | 63.21 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 261 | 63.24 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 266 | 63.28 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 283 | 63.36 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 289 | 63.40 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 292 | 63.43 | temperature | 15.0 | 10 | > th | dose dependent | sin | 1 | NA |
| 304 | 63.49 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 307 | 63.52 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 309 | 63.52 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 344 | 63.66 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 19 |
| 350 | 63.68 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 352 | 63.69 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 357 | 63.71 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 394 | 63.78 | temperature | 20.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 414 | 63.80 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 485 | 64.11 | temperature | 30.0 | 4320 | > th | dose independent | sin | 9 | NA |
| 490 | 64.14 | temperature | 30.0 | 4320 | > th | dose dependent | sin | 8 | NA |
| 510 | 64.17 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 515 | 64.20 | temperature | 30.0 | 4320 | < th | dose independent | sin | 9 | NA |
| 516 | 64.20 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 550 | 64.28 | temperature | 25.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 639 | 64.47 | temperature | 25.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 720 | 64.72 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 766 | 64.80 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 830 | 64.92 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 907 | 65.07 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 910 | 65.08 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 932 | 65.14 | temperature | 30.0 | 10 | < th | dose dependent | sin | 1 | NA |
| 939 | 65.16 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 968 | 65.20 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 975 | 65.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 987 | 65.24 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 17 |