Os08g0558600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Longin domain containing protein.
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Os08g0558600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Longin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.2 | 0.262 | 12.2 | -0.887 | 0.315 | 1.04 | -0.507 | -2.54 | -0.356 | 5.91 | 15.6 | 487 | -- | -- |
| 34.82 | 0.275 | 12.1 | -0.458 | 0.291 | 1.02 | 0.169 | -- | -0.233 | 6.77 | 13.83 | 604 | -- | -- |
| 31.68 | 0.262 | 12.2 | -0.85 | 0.303 | 1.03 | -- | -2.22 | -0.345 | 6.2 | 15.5 | 518 | -- | -- |
| 34.87 | 0.275 | 12.1 | -0.462 | 0.289 | 1.02 | -- | -- | -0.237 | 6.88 | 13.81 | 613 | -- | -- |
| 32.39 | 0.265 | 12.2 | -0.936 | -- | 0.798 | -- | -1.99 | -0.357 | -- | 16.28 | 1292 | -- | -- |
| 47.22 | 0.322 | 12.1 | -0.222 | 0.0585 | -- | -0.228 | -- | -0.0836 | 2.68 | -- | -- | -- | -- |
| 47.4 | 0.322 | 12.1 | -0.217 | 0.0588 | -- | -- | -- | -0.0823 | 3.12 | -- | -- | -- | -- |
| 35.9 | 0.279 | 12.1 | -0.474 | -- | 0.826 | -- | -- | -0.232 | -- | 13.28 | 1339 | -- | -- |
| 39.55 | 0.295 | 12.1 | -- | 0.314 | 0.922 | -- | -- | -0.168 | 2.43 | 13.81 | 613 | -- | -- |
| 47.59 | 0.322 | 12.1 | -0.214 | -- | -- | -- | -- | -0.0808 | -- | -- | -- | -- | -- |
| 48.63 | 0.326 | 12.1 | -- | 0.0545 | -- | -- | -- | -0.0582 | 3.11 | -- | -- | -- | -- |
| 40.99 | 0.298 | 12.1 | -- | -- | 0.633 | -- | -- | -0.149 | -- | 10.71 | 1241 | -- | -- |
| 48.8 | 0.326 | 12.1 | -- | -- | -- | -- | -- | -0.057 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 5 | 30.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 10 | 30.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 13 | 30.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 47 | 30.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 54 | 31.00 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 65 | 31.07 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 68 | 31.09 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 77 | 31.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 82 | 31.18 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 91 | 31.21 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 100 | 31.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 106 | 31.25 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 12 |
| 120 | 31.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 124 | 31.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 146 | 31.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 161 | 31.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 169 | 31.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 204 | 31.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 243 | 31.38 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 305 | 31.44 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 372 | 31.50 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 394 | 31.52 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 410 | 31.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 431 | 31.54 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 478 | 31.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 617 | 31.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 692 | 31.76 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 773 | 31.82 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 835 | 31.88 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 860 | 31.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 874 | 31.91 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |