BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0558600 Os08g0558600|AK066924
(241 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0558600 Longin domain containing protein 481 e-136
Os07g0194000 Similar to Vesicle-associated membrane protein... 268 3e-72
Os03g0803000 Longin domain containing protein 261 3e-70
Os03g0165800 Similar to Vesicle-associated membrane protein... 258 3e-69
Os12g0639800 Similar to Vesicle-associated membrane protein... 224 3e-59
Os07g0249200 Similar to Vesicle-associated membrane protein... 204 6e-53
Os10g0154000 Similar to Vesicle-associated membrane protein... 143 1e-34
Os06g0174400 Similar to Vesicle-associated membrane protein... 127 8e-30
Os02g0803600 Longin-like domain containing protein 120 1e-27
>Os08g0558600 Longin domain containing protein
Length = 241
Score = 481 bits (1237), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/241 (96%), Positives = 233/241 (96%)
Query: 1 MNGNKQSLIYSFVAKGSVVLAEHTAFSGNFSTIAVQCLQKLPPNTSKSTYSCDGHTFNFL 60
MNGNKQSLIYSFVAKGSVVLAEHTAFSGNFSTIAVQCLQKLPPNTSKSTYSCDGHTFNFL
Sbjct: 1 MNGNKQSLIYSFVAKGSVVLAEHTAFSGNFSTIAVQCLQKLPPNTSKSTYSCDGHTFNFL 60
Query: 61 VDRGFVFLVVADEAVGRSVPFVFLDRVKEDFMQRYGSSIDEEGQHPLXXXXXXXXFLLED 120
VDRGFVFLVVADEAVGRSVPFVFLDRVKEDFMQRYGSSIDEEGQHPL FLLED
Sbjct: 61 VDRGFVFLVVADEAVGRSVPFVFLDRVKEDFMQRYGSSIDEEGQHPLADDADDDDFLLED 120
Query: 121 RFSIAYNLDREFGPRLKDHMLYCINHPEEISKLSKVKAHLTEVKGIMMDNIEKILERGEK 180
RFSIAYNLDREFGPRLKDHMLYCINHPEEISKLSKVKAHLTEVKGIMMDNIEKILERGEK
Sbjct: 121 RFSIAYNLDREFGPRLKDHMLYCINHPEEISKLSKVKAHLTEVKGIMMDNIEKILERGEK 180
Query: 181 IELLVGKTETLQSQADSFHRHGRELRRKMWLQNLRFKLMVGGAVAALILFLWLIICGGFK 240
IELLVGKTETLQSQADSFHRHGRELRRKMWLQNLRFKLMVGGAVAALILFLWLIICGGFK
Sbjct: 181 IELLVGKTETLQSQADSFHRHGRELRRKMWLQNLRFKLMVGGAVAALILFLWLIICGGFK 240
Query: 241 C 241
C
Sbjct: 241 C 241
>Os07g0194000 Similar to Vesicle-associated membrane protein 725 (AtVAMP725)
Length = 220
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 178/237 (75%), Gaps = 20/237 (8%)
Query: 5 KQSLIYSFVAKGSVVLAEHTAFSGNFSTIAVQCLQKLPPNTSKSTYSCDGHTFNFLVDRG 64
+QSLIY+FVA+G+VVLAE+T F+GNF+TIA QCLQKLP + +K TY+CDGHTFN+LV+ G
Sbjct: 3 QQSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVEDG 62
Query: 65 FVFLVVADEAVGRSVPFVFLDRVKEDFMQRYGSSIDEEGQHPLXXXXXXXXFLLEDRFSI 124
F + VVA E+VGR +P FLDRVKEDF +RYG +
Sbjct: 63 FTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAAT--------------------AA 102
Query: 125 AYNLDREFGPRLKDHMLYCINHPEEISKLSKVKAHLTEVKGIMMDNIEKILERGEKIELL 184
A +L+REFG +LK+HM YC++HPEEISKL+KVKA ++EVKG+MM+NIEK+L+RGEKIELL
Sbjct: 103 ANSLNREFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELL 162
Query: 185 VGKTETLQSQADSFHRHGRELRRKMWLQNLRFKLMVGGAVAALILFLWLIICGGFKC 241
V KTE L+SQA F + G ++RRKMWLQN++ KL+V G + ALIL + L +C GFKC
Sbjct: 163 VDKTENLRSQAQDFRQQGTKVRRKMWLQNMKIKLIVLGIIIALILIIILSVCHGFKC 219
>Os03g0803000 Longin domain containing protein
Length = 220
Score = 261 bits (667), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 133/237 (56%), Positives = 176/237 (74%), Gaps = 20/237 (8%)
Query: 5 KQSLIYSFVAKGSVVLAEHTAFSGNFSTIAVQCLQKLPPNTSKSTYSCDGHTFNFLVDRG 64
+QSLIY+FVA+G+V+LAE+T F+GNF+TIA QCL KLP + +K TY+CDGHTFN+LV+ G
Sbjct: 3 QQSLIYAFVARGTVILAEYTEFTGNFTTIASQCLMKLPASNNKFTYNCDGHTFNYLVEDG 62
Query: 65 FVFLVVADEAVGRSVPFVFLDRVKEDFMQRYGSSIDEEGQHPLXXXXXXXXFLLEDRFSI 124
F + VVA E+VGR +P FLDRVK+DF +RY +
Sbjct: 63 FTYCVVAVESVGRQIPIAFLDRVKDDFTKRYAGGKAAT--------------------AA 102
Query: 125 AYNLDREFGPRLKDHMLYCINHPEEISKLSKVKAHLTEVKGIMMDNIEKILERGEKIELL 184
A +L+R+FG +LK+HM YC++HPEEISKL+KVKA ++EVKG+MM+NIEK+L+RGEKIELL
Sbjct: 103 ANSLNRDFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELL 162
Query: 185 VGKTETLQSQADSFHRHGRELRRKMWLQNLRFKLMVGGAVAALILFLWLIICGGFKC 241
V KTE L+SQA F + G ++RRKMWLQN++ KL+V G + ALIL + L +C GFKC
Sbjct: 163 VDKTENLRSQAQDFRQAGTQVRRKMWLQNMKIKLIVLGIIIALILIIILSVCHGFKC 219
>Os03g0165800 Similar to Vesicle-associated membrane protein 725 (AtVAMP725)
Length = 223
Score = 258 bits (659), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 121/237 (51%), Positives = 164/237 (69%), Gaps = 20/237 (8%)
Query: 5 KQSLIYSFVAKGSVVLAEHTAFSGNFSTIAVQCLQKLPPNTSKSTYSCDGHTFNFLVDRG 64
+ +L+YSFVA+G+VVLA+H SGNF+++A QCLQKLP ++ +Y+CDGHTFN+ V G
Sbjct: 6 RTTLVYSFVARGAVVLADHAEVSGNFASVAAQCLQKLPSTNNRHSYNCDGHTFNYHVHDG 65
Query: 65 FVFLVVADEAVGRSVPFVFLDRVKEDFMQRYGSSIDEEGQHPLXXXXXXXXFLLEDRFSI 124
F + VVA E+ GR +P F++RVKEDF ++Y + + +
Sbjct: 66 FTYCVVATESAGRQLPVGFIERVKEDFSKKYSGG--------------------KAKNAT 105
Query: 125 AYNLDREFGPRLKDHMLYCINHPEEISKLSKVKAHLTEVKGIMMDNIEKILERGEKIELL 184
A +L RE+GP+LK+HM YC HPEEI KL+KVKA +TEVKG+MM NIEK+L+RGEKIELL
Sbjct: 106 ANSLKREYGPKLKEHMKYCDAHPEEIDKLAKVKAQVTEVKGVMMQNIEKVLDRGEKIELL 165
Query: 185 VGKTETLQSQADSFHRHGRELRRKMWLQNLRFKLMVGGAVAALILFLWLIICGGFKC 241
V KTE L+SQA F + G ++RRKMW +N++ KL+V G V ALIL + L +C C
Sbjct: 166 VDKTEDLRSQAQDFRKAGTKIRRKMWWENMKMKLIVFGIVVALILVIILTVCRDLNC 222
>Os12g0639800 Similar to Vesicle-associated membrane protein 722 (AtVAMP722)
(Synaptobrevin- related protein 1)
Length = 212
Score = 224 bits (572), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 146/217 (67%), Gaps = 24/217 (11%)
Query: 8 LIYSFVAKGSVVLAEHTAFSGNFSTIAVQCLQKLPPNTSKSTYSCDGHTFNFLVDRGFVF 67
LIY+ VA+G+VVLAEHTA++GNF IA QCLQKLP ++ TY+CD HTFNFL+ +G+ +
Sbjct: 6 LIYAMVARGTVVLAEHTAYAGNFRDIAAQCLQKLPAGDNRLTYTCDAHTFNFLIHQGYAY 65
Query: 68 LVVADEAVGRSVPFVFLDRVKEDFMQRYGSSIDEEGQHPLXXXXXXXXFLLEDRFSIAYN 127
VVA E+ GR +P LD +KEDF +RY + A +
Sbjct: 66 CVVATESSGRQIPLALLDMIKEDFNKRYAGGKAAT--------------------AAANS 105
Query: 128 LDREFGPRLKDHMLYCINHPEEISKLSKVKAHLTEVKGIMMDNIEKILERGEKIELLVGK 187
L R+FGPRL + M YC++HPEE+SKL+KVKA ++EVKGIMM+NI+K ++RG++I++LV +
Sbjct: 106 LSRDFGPRLGEQMKYCMDHPEEVSKLAKVKAQVSEVKGIMMENIDKAIDRGQQIDVLVSR 165
Query: 188 TETLQSQAD----SFHRHGRELRRKMWLQNLRFKLMV 220
TE L QA F + G +RRKMW QN++ KL+V
Sbjct: 166 TEQLHDQAGISAADFRQQGTRVRRKMWYQNMKIKLIV 202
>Os07g0249200 Similar to Vesicle-associated membrane protein 724 (AtVAMP724)
(SYBL1-like protein)
Length = 248
Score = 204 bits (518), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 158/243 (65%), Gaps = 29/243 (11%)
Query: 8 LIYSFVAKGSVVLAEHTAFSGNFSTIAVQCLQKLPPNTS---------KSTYSCDGHTFN 58
LIY+FVA+G+ VLAE+T F+GNF +A QCLQ+LP + + +Y+CDGHTFN
Sbjct: 23 LIYAFVARGTAVLAEYTEFTGNFPALAAQCLQRLPASGGGGSGGGAPARFSYACDGHTFN 82
Query: 59 FLVDRGFVFLVVADEAVGRSVPFVFLDRVKEDFMQRYGSSIDEEGQHPLXXXXXXXXFLL 118
FL+ RG+ + VVA E+V ++V FL+R+K+DFM+RYG +
Sbjct: 83 FLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYGGGKADT---------------- 126
Query: 119 EDRFSIAYNLDREFGPRLKDHMLYCINHPEEISKLSKVKAHLTEVKGIMMDNIEKILERG 178
++A +L++E+GP +K HM Y ++H EEI K KV+A ++EVK IM++NIEK L RG
Sbjct: 127 ----ALAKSLNKEYGPVIKQHMQYVLDHSEEIEKTLKVQAQVSEVKNIMLENIEKTLGRG 182
Query: 179 EKIELLVGKTETLQSQADSFHRHGRELRRKMWLQNLRFKLMVGGAVAALILFLWLIICGG 238
EK+ L KT LQSQA F + G ++RRK WLQN++ KL+V G + L++ +W+ +C G
Sbjct: 183 EKLSELQDKTSDLQSQAQEFKKKGVKIRRKTWLQNMKIKLVVLGILLLLVIIVWVSVCQG 242
Query: 239 FKC 241
F C
Sbjct: 243 FDC 245
>Os10g0154000 Similar to Vesicle-associated membrane protein 714 (AtVAMP714)
Length = 226
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 136/243 (55%), Gaps = 35/243 (14%)
Query: 7 SLIYSFVAKGSVVLAEHTAFSGNFSTIAVQCLQKLPPNT-SKSTYSCDGHTFNFL----- 60
+++Y+ VA+G+VVLAE +A SGN +A + L+KLPP+ S+ ++ D + F+ L
Sbjct: 2 AIVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIFHVLRSPPP 61
Query: 61 -VDRGFVFLVVADEAVGRSVPFVFLDRVKEDFMQRYGSSIDEEGQHPLXXXXXXXXFLLE 119
G FL +A++ GR +PF++L+ ++ F++ YG
Sbjct: 62 AAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGRIAHN------------------ 103
Query: 120 DRFSIAYNLDREFGPRLKDHMLYCINHPEEISKLSKVKAHLTEVKGIMMDNIEKILERGE 179
++AY ++ EF L M Y ++P L++++ ++E+ +M+DNIEKIL+RGE
Sbjct: 104 ---ALAYAMNDEFSRVLHQQMEYFSSNPSA-DTLNRLRGEVSEIHTVMVDNIEKILDRGE 159
Query: 180 KIELLVGKTETLQSQADSFHRHGRELRRKMWLQNLRFKLMVGGAVAALILFLWLII---C 236
+I LLV KT T+Q A F + R LRR +W++N + ++ A ++L L+LII C
Sbjct: 160 RISLLVDKTSTMQDSAFHFRKQSRRLRRALWMKNAK---LLAVLTAVIVLLLYLIIAAFC 216
Query: 237 GGF 239
GG
Sbjct: 217 GGL 219
>Os06g0174400 Similar to Vesicle-associated membrane protein 712 (AtVAMP712)
Length = 221
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 24/235 (10%)
Query: 7 SLIYSFVAKGSVVLAEHTAFSGNFSTIAVQCLQKLPPNTSKS--TYSCDGHTFNFLVDRG 64
+++Y+ VA+G+VVLAEH+A + N +A Q L++LP + S +Y+ D + F+ G
Sbjct: 2 AILYAVVARGTVVLAEHSAAATNAGAVARQVLERLPGGGADSHVSYTQDRYVFHAKRTDG 61
Query: 65 FVFLVVADEAVGRSVPFVFLDRVKEDFMQRYGSSIDEEGQHPLXXXXXXXXFLLEDRFSI 124
L +ADEA GR +PF FL+ + F++ YG + S+
Sbjct: 62 ITALCMADEAAGRRIPFAFLEDIHGRFVKTYGRAALT---------------------SL 100
Query: 125 AYNLDREFGPRLKDHMLYCINHPEEISKLSKVKAHLTEVKGIMMDNIEKILERGEKIELL 184
AY ++ EF L M Y N P ++++++ +++V+ +M+DNI+K+LERG+++++L
Sbjct: 101 AYGMNDEFSRVLSQQMDYYSNDPNA-DRINRMRGEISQVRTVMIDNIDKVLERGDRLDML 159
Query: 185 VGKTETLQSQADSFHRHGRELRRKMWLQNLRFKLMVGGAVAALILFLWLIICGGF 239
V KT +Q F R R R W +N++ + + + +I + + +C GF
Sbjct: 160 VDKTANMQGNTIRFKRQARRFRNTTWWRNVKLTIALIFLLTVIIYVVLVFMCHGF 214
>Os02g0803600 Longin-like domain containing protein
Length = 226
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 37/241 (15%)
Query: 10 YSFVAKGSVVLAEH--TAFSGNFSTIAVQCLQKLPPNTSKS------TYSCDGHTFNFLV 61
Y+ VA+G+VV+AEH AF N +A Q L +L +Y+ D H F+
Sbjct: 6 YAAVARGAVVMAEHGDAAFP-NAGAVARQILDRLSAGDGGGGGDCNISYTQDLHVFHVKR 64
Query: 62 DRGFVFLVVADEAVGRSVPFVFLDRVKEDFMQRYGSSIDEEGQHPLXXXXXXXXFLLEDR 121
G L +AD+A GR +PF FL+ + F++ YG +
Sbjct: 65 TDGVTALCMADDAAGRRIPFAFLEDIHGRFVKTYGRAALT-------------------- 104
Query: 122 FSIAYNLDREFGPRLKDHMLYCINHPEEISKLSKVKAHLTEVKGIMMDNIEKILERGEKI 181
++AY ++ EF L M Y N P ++S+++ + +V+ +M+DNI+K+LERG+++
Sbjct: 105 -ALAYAMNDEFSRVLGQQMDYYSNDPNA-DRISRMRGEMDQVRNVMIDNIDKVLERGDRL 162
Query: 182 ELLVGKTETLQSQADSFHRHGRELRRKMWLQNLRFKLMVGGAVAALILFLWLII---CGG 238
ELLV KT T+Q F R R R +W +N++ + +V L++ +++++ C G
Sbjct: 163 ELLVDKTATMQGNTMRFKRQARRFRNTVWWRNVK---LTAASVFILLVIIYIVLVYMCHG 219
Query: 239 F 239
F
Sbjct: 220 F 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.140 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,739,024
Number of extensions: 285113
Number of successful extensions: 1058
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1044
Number of HSP's successfully gapped: 9
Length of query: 241
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 143
Effective length of database: 11,918,829
Effective search space: 1704392547
Effective search space used: 1704392547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)