BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0194000 Os07g0194000|AK060910
(220 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G32670.1 | chr2:13857941-13859346 FORWARD LENGTH=286 381 e-106
AT1G04750.1 | chr1:1331857-1333426 REVERSE LENGTH=220 380 e-106
AT1G04760.1 | chr1:1334760-1336070 FORWARD LENGTH=221 376 e-105
AT2G33120.2 | chr2:14043785-14045337 REVERSE LENGTH=230 361 e-100
AT4G15780.1 | chr4:8980081-8981697 REVERSE LENGTH=223 315 8e-87
AT2G33110.1 | chr2:14041297-14042892 REVERSE LENGTH=218 289 6e-79
AT3G54300.1 | chr3:20108355-20110127 REVERSE LENGTH=241 278 2e-75
AT5G11150.1 | chr5:3546625-3547844 REVERSE LENGTH=222 164 4e-41
AT4G32150.1 | chr4:15526407-15527651 REVERSE LENGTH=220 157 3e-39
AT5G22360.1 | chr5:7404379-7405654 REVERSE LENGTH=222 151 2e-37
AT2G25340.1 | chr2:10792664-10793832 REVERSE LENGTH=220 143 8e-35
AT3G24890.2 | chr3:9098179-9098756 FORWARD LENGTH=125 91 4e-19
AT5G58060.2 | chr5:23498277-23500128 FORWARD LENGTH=222 48 4e-06
>AT2G32670.1 | chr2:13857941-13859346 FORWARD LENGTH=286
Length = 285
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/219 (82%), Positives = 192/219 (87%)
Query: 1 MGQQSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVE 60
MGQQ+LIY+FVARGTV+L EYTEF GNFT +AAQCLQKLP+SNNKFTYNCDGHTFNYLVE
Sbjct: 66 MGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 125
Query: 61 DGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQY 120
+GFTYCVVAVESVGRQIP+AFL+RVKEDF KRYGGGKA TA ANSLNREFGSKLKEHMQY
Sbjct: 126 NGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQY 185
Query: 121 CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 180
CVDHP+EISKLAKVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR QG
Sbjct: 186 CVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQG 245
Query: 181 TKVRRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHGFKC 219
TK+RRKMW +NMK SVC GFKC
Sbjct: 246 TKIRRKMWFENMKIKLIVLGIIITLILIIILSVCGGFKC 284
>AT1G04750.1 | chr1:1331857-1333426 REVERSE LENGTH=220
Length = 219
Score = 380 bits (975), Expect = e-106, Method: Compositional matrix adjust.
Identities = 178/219 (81%), Positives = 193/219 (88%)
Query: 1 MGQQSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVE 60
M QQSLIY+FVARGTV+L E+T+F GNFT+IAAQCLQKLP+SNNKFTYNCDGHTFNYLVE
Sbjct: 1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60
Query: 61 DGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQY 120
DGFTYCVVAV+S GRQIP++FL+RVKEDF KRYGGGKAATA ANSLN+EFGSKLKEHMQY
Sbjct: 61 DGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQY 120
Query: 121 CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 180
C+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR G
Sbjct: 121 CMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTG 180
Query: 181 TKVRRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHGFKC 219
T++RRKMWLQNMK SVCHGFKC
Sbjct: 181 TQMRRKMWLQNMKIKLIVLAIIIALILIIVLSVCHGFKC 219
>AT1G04760.1 | chr1:1334760-1336070 FORWARD LENGTH=221
Length = 220
Score = 376 bits (965), Expect = e-105, Method: Compositional matrix adjust.
Identities = 174/219 (79%), Positives = 192/219 (87%)
Query: 1 MGQQSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVE 60
MGQQSLIY+FVARGTV+LAEYTEF GNFT++AAQCLQKLP+SNNKFTYNCDGHTFNYL +
Sbjct: 1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLAD 60
Query: 61 DGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQY 120
+GFTYCVV +ES GRQIP+AFL+RVKEDF KRYGGGKA+TA ANSLN+EFGSKLKEHMQY
Sbjct: 61 NGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQY 120
Query: 121 CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 180
C DHPEEISKL+KVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR QG
Sbjct: 121 CADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQG 180
Query: 181 TKVRRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHGFKC 219
TK++RK+W +NMK SVCHGFKC
Sbjct: 181 TKMKRKLWFENMKIKLIVFGIIVALILIIILSVCHGFKC 219
>AT2G33120.2 | chr2:14043785-14045337 REVERSE LENGTH=230
Length = 229
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/227 (76%), Positives = 191/227 (84%), Gaps = 8/227 (3%)
Query: 1 MGQQSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVE 60
M QQSLIY+FVARGTV+L E+T+F GNFT+IAAQCLQKLP+SNNKFTYNCDGHTFNYLVE
Sbjct: 1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60
Query: 61 DGFT--------YCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGS 112
+GF+ YCVVAV+S GRQIP+AFL+RVKEDF KRYGGGKAATA ANSLN+EFGS
Sbjct: 61 NGFSESKYCSISYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGS 120
Query: 113 KLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172
KLKEHMQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ
Sbjct: 121 KLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 180
Query: 173 AQDFRQQGTKVRRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHGFKC 219
AQDFR QGT++RRKMW QNMK S+C GF C
Sbjct: 181 AQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIALILIIILSICGGFNC 227
>AT4G15780.1 | chr4:8980081-8981697 REVERSE LENGTH=223
Length = 222
Score = 315 bits (808), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 147/220 (66%), Positives = 176/220 (80%), Gaps = 1/220 (0%)
Query: 1 MGQQSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNN-KFTYNCDGHTFNYLV 59
MGQ+S IY+FVARGT++LAEYTEFTGNF +IAAQCLQKLP+S+N KFTYNCD HTFN+LV
Sbjct: 1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLV 60
Query: 60 EDGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQ 119
EDG+ YCVVA +S+ +QI IAFL+RVK DF KRYGGGKA+TA A SLN+EFG +KEHM
Sbjct: 61 EDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMN 120
Query: 120 YCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQ 179
Y VDH EEI KL KVKAQVSEVK +M+ENI+K +DRGE + +L DKTENLRSQA+++++Q
Sbjct: 121 YIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAREYKKQ 180
Query: 180 GTKVRRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHGFKC 219
GT+VRRK+W QNMK SVCHGF C
Sbjct: 181 GTQVRRKLWYQNMKIKLVVLGILLLLVLIIWISVCHGFNC 220
>AT2G33110.1 | chr2:14041297-14042892 REVERSE LENGTH=218
Length = 217
Score = 289 bits (740), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 141/219 (64%), Positives = 164/219 (74%), Gaps = 4/219 (1%)
Query: 1 MGQQSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVE 60
M QQSL Y+F+ARGTV+L E+T+F GNFT++AAQ L+ LP+SNNKFTYNCDGHTFN LVE
Sbjct: 1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVE 60
Query: 61 DGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQY 120
+GFTYCVVAV+S GR+IP+AFL+RVKEDF KRYGG KAAT ANSLN+EFGS LKEHMQY
Sbjct: 61 NGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQY 120
Query: 121 CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 180
C+DHP+EIS LAK KAQVSEVK +MMENIEKVL RG E+L SQ Q F +
Sbjct: 121 CMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSS----ESQPQAFYIKR 176
Query: 181 TKVRRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHGFKC 219
T+++RK W QNMK SVC GF C
Sbjct: 177 TQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNC 215
>AT3G54300.1 | chr3:20108355-20110127 REVERSE LENGTH=241
Length = 240
Score = 278 bits (710), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/239 (56%), Positives = 170/239 (71%), Gaps = 21/239 (8%)
Query: 1 MGQQSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVE 60
M Q+ LIY+FVA+GTVVLAE+T ++GNF+TIA QCLQKLP +++K+TY+CDGHTFN+LV+
Sbjct: 1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVD 60
Query: 61 DGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGG--------------------GKAAT 100
+GF + VVA ES GR +P FL+RVKEDF KRY G +
Sbjct: 61 NGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFS 120
Query: 101 AAANSLNREFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 160
A N L+REFG LKEHMQYC+ HPEE+SKL+K+KAQ++EVKG+MM+NIEKVLDRGEKIE
Sbjct: 121 VAYN-LDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIE 179
Query: 161 LLVDKTENLRSQAQDFRQQGTKVRRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHGFKC 219
LLVDKTENL+ QA F++QG ++RRKMWLQ+++ C GFKC
Sbjct: 180 LLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVFSFILIVWVVACGGFKC 238
>AT5G11150.1 | chr5:3546625-3547844 REVERSE LENGTH=222
Length = 221
Score = 164 bits (414), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 130/214 (60%), Gaps = 4/214 (1%)
Query: 5 SLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPA--SNNKFTYNCDGHTFNYLVEDG 62
++I+A VARGTVVL+E++ + N ++I+ Q L+KLP S++ +Y+ D + F+ DG
Sbjct: 2 AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDG 61
Query: 63 FTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQYCV 122
T +A E+ GR IP AFLD + + F K YG +A A S+N EF L + M++
Sbjct: 62 LTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRA-IHSAQAYSMNDEFSRVLSQQMEFYS 120
Query: 123 DHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTK 182
+ P +++++K ++S+V+ VM+ENI+KVLDRGE++ELLVDKTEN++ FR+Q +
Sbjct: 121 NDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARR 179
Query: 183 VRRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHG 216
R MW +N+K VCHG
Sbjct: 180 YRTIMWWRNVKLTIALILVLALVVYIAMAFVCHG 213
>AT4G32150.1 | chr4:15526407-15527651 REVERSE LENGTH=220
Length = 219
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 127/213 (59%), Gaps = 3/213 (1%)
Query: 5 SLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNK-FTYNCDGHTFNYLVEDGF 63
+++YA VARGTVVL+E+T + N +TIA Q L+K+P N+ +Y+ D + F+ DG
Sbjct: 2 AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGL 61
Query: 64 TYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQYCVD 123
T +A E+ GR+IP AFL+ + + F + YG TA A ++N EF L + + Y +
Sbjct: 62 TVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRA-VHTALAYAMNEEFSRVLSQQIDYYSN 120
Query: 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKV 183
P ++ ++K ++++V+GVM+ENI+KVLDRGE++ELLVDKT N++ FR+Q +
Sbjct: 121 DPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRF 179
Query: 184 RRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHG 216
R +W +N K +CHG
Sbjct: 180 RSNVWWRNCKLTVLLILLLLVIIYIAVAFLCHG 212
>AT5G22360.1 | chr5:7404379-7405654 REVERSE LENGTH=222
Length = 221
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 124/192 (64%), Gaps = 4/192 (2%)
Query: 4 QSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPA--SNNKFTYNCDGHTFNYLVED 61
+++YA VARGTVVLAE++ TGN + + L+KL S+ + ++ D + F+ L D
Sbjct: 1 MAIVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSD 60
Query: 62 GFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQYC 121
G T+ +A ++ GR++P ++L+ + F K YG A A A ++N EF L + M++
Sbjct: 61 GLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGK-VAHNAPAYAMNDEFSRVLHQQMEFF 119
Query: 122 VDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGT 181
+P + L +V+ +VSE++ VM+ENIEK+++RG++IELLVDKT ++ + FR+Q
Sbjct: 120 SSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSK 178
Query: 182 KVRRKMWLQNMK 193
++RR +W++N K
Sbjct: 179 RLRRALWMKNAK 190
>AT2G25340.1 | chr2:10792664-10793832 REVERSE LENGTH=220
Length = 219
Score = 143 bits (360), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 123/213 (57%), Gaps = 3/213 (1%)
Query: 5 SLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPAS-NNKFTYNCDGHTFNYLVEDGF 63
S++YA VARGTVVLAE + + N +TIA Q L+K+P + ++ +Y+ D + F+ DG
Sbjct: 2 SILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGL 61
Query: 64 TYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQYCVD 123
T +A E GR+IP +FL+ + + F + YG +A A ++N EF L + ++Y +
Sbjct: 62 TVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRA-IHSAQAYAMNDEFSRVLNQQIEYYSN 120
Query: 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKV 183
P ++++K ++++V+ VM+ENI+ +LDRGE++ELLVDKT N++ FR+Q +
Sbjct: 121 DPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRF 179
Query: 184 RRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHG 216
+W +N K CHG
Sbjct: 180 NNTVWWRNCKLTLLLILVLLVIIYIGVAFACHG 212
>AT3G24890.2 | chr3:9098179-9098756 FORWARD LENGTH=125
Length = 124
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 62/87 (71%), Gaps = 6/87 (6%)
Query: 113 KLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVD---KTENL 169
+L++ + + HPEEISKLAKVKA V+++KGVMMENIEK LDR EKI++LVD K NL
Sbjct: 14 QLEQRVLVLLAHPEEISKLAKVKALVTKMKGVMMENIEKALDRSEKIKILVDLRSKYSNL 73
Query: 170 RSQA---QDFRQQGTKVRRKMWLQNMK 193
+ +D GTK+ RKMW QNMK
Sbjct: 74 PFPSYGQEDIITPGTKITRKMWFQNMK 100
>AT5G58060.2 | chr5:23498277-23500128 FORWARD LENGTH=222
Length = 221
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 80 AFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQYCVDHPEEISKLAKVKAQVS 139
+ L++V +++ K +G ++ +A N+ + L E + D P E KL K++ ++
Sbjct: 115 SLLNQVLDEYQKSFG--ESWRSAKEDSNQPW-PYLTEALNKFQD-PAEADKLLKIQRELD 170
Query: 140 EVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTK 182
E K ++ + I+ VL RGEK++ LV+K+ +L +Q F +Q K
Sbjct: 171 ETKIILHKTIDSVLARGEKLDSLVEKSSDLSMASQMFYKQAKK 213
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,202,696
Number of extensions: 161299
Number of successful extensions: 588
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 15
Length of query: 220
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 125
Effective length of database: 8,502,049
Effective search space: 1062756125
Effective search space used: 1062756125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)