BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0118900 Os10g0118900|AK058386
(195 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0118900 Conserved hypothetical protein 376 e-105
Os04g0599600 110 6e-25
Os04g0424200 Conserved hypothetical protein 108 3e-24
Os06g0310200 Conserved hypothetical protein 108 3e-24
Os03g0440200 Conserved hypothetical protein 107 8e-24
Os04g0582000 Conserved hypothetical protein 100 7e-22
Os10g0537600 Conserved hypothetical protein 98 4e-21
Os07g0495900 Similar to Regulator of nonsense transcripts 1... 90 1e-18
Os04g0582900 Conserved hypothetical protein 86 1e-17
Os03g0586900 Putative DNA helicase family protein 83 1e-16
Os02g0684150 77 9e-15
Os03g0160400 Similar to ACL098Cp 77 1e-14
AK110123 70 8e-13
Os09g0130800 DEAD/DEAH box helicase, N-terminal domain cont... 67 8e-12
AK110425 66 1e-11
Os02g0704300 Conserved hypothetical protein 66 2e-11
>Os10g0118900 Conserved hypothetical protein
Length = 195
Score = 376 bits (966), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 QNVHEAQFVLRLYENLQKFLRANGGKKASVGIITPYKLQLKCLQREFEEVMSTEDGKDIY 60
QNVHEAQFVLRLYENLQKFLRANGGKKASVGIITPYKLQLKCLQREFEEVMSTEDGKDIY
Sbjct: 1 QNVHEAQFVLRLYENLQKFLRANGGKKASVGIITPYKLQLKCLQREFEEVMSTEDGKDIY 60
Query: 61 INTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVVGNAGALMQSE 120
INTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVVGNAGALMQSE
Sbjct: 61 INTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVVGNAGALMQSE 120
Query: 121 DWALLIADAKARKCFMDLDTIPKDFLAMKISNSVPRNGSYRNLDDLGRPGDRSRDNLPFG 180
DWALLIADAKARKCFMDLDTIPKDFLAMKISNSVPRNGSYRNLDDLGRPGDRSRDNLPFG
Sbjct: 121 DWALLIADAKARKCFMDLDTIPKDFLAMKISNSVPRNGSYRNLDDLGRPGDRSRDNLPFG 180
Query: 181 M 181
M
Sbjct: 181 M 181
>Os04g0599600
Length = 923
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 88/139 (63%), Gaps = 3/139 (2%)
Query: 1 QNVHEAQFVLRLYENLQKFLRANGGKKASVGIITPYKLQLKCLQREFEEVMSTEDGKDIY 60
+N+ E VL L + + K + G + S+G+I+PY Q+ ++ ++ T DG +
Sbjct: 688 RNLVEVAVVLHLIQTIFKTWKRKG-QMLSIGVISPYSSQVDSIESRLGKLYDTCDGFHVR 746
Query: 61 INTVDAFQGQERDVIIMSCVRASNHG-VGFVADIRRMNVALTRARRALWVVGNAGALMQS 119
+ +VD FQG+E D+II+S VR++ G VGF+AD +R NVALTRAR LW++GNA L S
Sbjct: 747 VKSVDGFQGEEDDIIILSTVRSNVKGIVGFLADEQRTNVALTRARHCLWILGNANTLYSS 806
Query: 120 ED-WALLIADAKARKCFMD 137
W LIADA+ RKC +D
Sbjct: 807 GTVWKDLIADAQRRKCIID 825
>Os04g0424200 Conserved hypothetical protein
Length = 836
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 7/155 (4%)
Query: 2 NVHEAQFVLRLYENLQKFLRANGGKKAS-VGIITPYKLQLKCLQREFEEVMSTEDGKDIY 60
N E +F+ LY Q +R K +S V +I+PY+ Q+K L+ F + + I
Sbjct: 604 NEDEVEFITLLYH--QMAMRYPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQSKEVID 661
Query: 61 INTVDAFQGQERDVIIMSCVRAS-NHGVGFVADIRRMNVALTRARRALWVVGNAGALMQS 119
+NTVD FQG+E++V+I SCVR + +GFV+D RRMNVA+TRAR A+ VVG+A L +
Sbjct: 662 VNTVDGFQGREKEVVIFSCVRCNKEQKIGFVSDFRRMNVAITRARSAVLVVGSASTLKED 721
Query: 120 EDWALLIADAKARKCFMDLDTIPKDFLAMKISNSV 154
+ W L+ AK R + +PK F A + + +
Sbjct: 722 KHWNNLVESAKERGRYFQ---VPKPFTAFFVDDKL 753
>Os06g0310200 Conserved hypothetical protein
Length = 1029
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 7/155 (4%)
Query: 2 NVHEAQFVLRLYENLQKFLRANGGKKAS-VGIITPYKLQLKCLQREFEEVMSTEDGKDIY 60
N E +F+ LY Q +R K +S V +I+PY+ Q+K L+ F + + I
Sbjct: 634 NEDEVEFITLLYH--QMAMRYPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQSKEVID 691
Query: 61 INTVDAFQGQERDVIIMSCVRAS-NHGVGFVADIRRMNVALTRARRALWVVGNAGALMQS 119
+NTVD FQG+E++V+I SCVR + +GFV+D RRMNVA+TRAR A+ VVG+A L +
Sbjct: 692 VNTVDGFQGREKEVVIFSCVRCNKEQKIGFVSDFRRMNVAITRARSAVLVVGSASTLKED 751
Query: 120 EDWALLIADAKARKCFMDLDTIPKDFLAMKISNSV 154
+ W L+ AK R + +PK F A + + +
Sbjct: 752 KHWNNLVESAKERGRYFQ---VPKPFTAFFVDDKL 783
>Os03g0440200 Conserved hypothetical protein
Length = 824
Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 90/155 (58%), Gaps = 7/155 (4%)
Query: 2 NVHEAQFVLRLYENLQKFLRANGGKKAS-VGIITPYKLQLKCLQREFEEVMSTEDGKDIY 60
N E +F+ LY Q +R K +S V +I+PY+ Q+K L+ F + + I
Sbjct: 604 NEDEVEFITLLYH--QMAMRYPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQSKEVID 661
Query: 61 INTVDAFQGQERDVIIMSCVRASN-HGVGFVADIRRMNVALTRARRALWVVGNAGALMQS 119
+NTVD FQG E++V+I SCVR + +GFV+D RRMNVA+TRAR A+ VVG+A L +
Sbjct: 662 VNTVDGFQGCEKEVVIFSCVRCNKEQKIGFVSDFRRMNVAITRARSAVLVVGSASTLKED 721
Query: 120 EDWALLIADAKARKCFMDLDTIPKDFLAMKISNSV 154
+ W L+ AK R + +PK F A + + +
Sbjct: 722 KHWNNLVESAKERGRYFQ---VPKPFTAFFVDDKL 753
>Os04g0582000 Conserved hypothetical protein
Length = 813
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 79/132 (59%), Gaps = 7/132 (5%)
Query: 8 FVLRLYENLQKFLRANGGKKASVGIITPYKLQLKCLQREFEEVMSTEDGKDIYINTVDAF 67
V RL+E FL G K +VG+++PY Q++ +Q + + D + + +VD F
Sbjct: 641 IVRRLFEE-SVFL----GSKLTVGVVSPYNAQVRAIQEKIGKTYDMYDDFSVKVKSVDGF 695
Query: 68 QGQERDVIIMSCVRASNHG-VGFVADIRRMNVALTRARRALWVVGNAGALMQSED-WALL 125
QG E DVII+S VR++ G VGF+ +++R N+ALTRA+ LW+VGN L S W +
Sbjct: 696 QGAEEDVIIISTVRSNRAGSVGFLTNLQRTNMALTRAKHCLWIVGNGTTLSNSRSVWQKV 755
Query: 126 IADAKARKCFMD 137
+ DAK R CF +
Sbjct: 756 VNDAKHRGCFFE 767
>Os10g0537600 Conserved hypothetical protein
Length = 985
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Query: 26 KKASVGIITPYKLQLKCLQREFEEVMSTEDGKDIYINTVDAFQGQERDVIIMSCVRASNH 85
++ S+G+I+PY Q+ LQ + + + + ++D FQG E D+I++S VR++ +
Sbjct: 393 QRTSLGVISPYTAQVIALQERLGKQFKNHEFLSVTVKSIDGFQGGEEDIILISTVRSNKN 452
Query: 86 G-VGFVADIRRMNVALTRARRALWVVGNAGALMQSED-WALLIADAKARKCFMD 137
G VGF++D R+NVALTRA+ LW++GN L+ S WA L+ D+K R CF +
Sbjct: 453 GKVGFLSDAGRINVALTRAKYCLWILGNGATLLASNSIWAELVHDSKRRGCFFN 506
>Os07g0495900 Similar to Regulator of nonsense transcripts 1 homolog
Length = 1013
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 19 FLRANGGKKASVGIITPYKLQLKCLQREFEEVMSTEDG--KDIYINTVDAFQGQERDVII 76
FLR+ G + +G+ITPY+ Q + S K+I + +VD+FQG+E+D II
Sbjct: 560 FLRS-GVVPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYII 618
Query: 77 MSCVRASNH-GVGFVADIRRMNVALTRARRALWVVGNAGALMQSEDWALLIADAKARKCF 135
+SCVR++ H G+GF+ D RR+NVALTRAR + ++GN L + W L+ K +C
Sbjct: 619 LSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECL 678
Query: 136 MD 137
++
Sbjct: 679 VE 680
>Os04g0582900 Conserved hypothetical protein
Length = 132
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 61 INTVDAFQGQERDVIIMSCVRASNHG-VGFVADIRRMNVALTRARRALWVVGNAGALMQS 119
+N+VD FQG E D+II+S VR+++ G +GF+++ RR NVALTRAR LW++G+A L+ S
Sbjct: 1 VNSVDGFQGSEEDIIILSTVRSNSTGSIGFLSNRRRANVALTRARHCLWILGDAATLLGS 60
Query: 120 ED-WALLIADAKARKCFMDLDTIPKDFLAMKISNSVPRNGSYRNLDD 165
W L+ DA R+CF D D L V R G LDD
Sbjct: 61 GSVWGELVRDAVDRRCFYDWDDGGAGLLG------VARRGHEDELDD 101
>Os03g0586900 Putative DNA helicase family protein
Length = 651
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 65/96 (67%), Gaps = 8/96 (8%)
Query: 18 KFLRANGGKKASVGIITPYKLQLKCLQREFEEVMSTEDGK--DIYINTVDAFQGQERDVI 75
K L +G + + +GIITPY Q+ CL+ +M +D K D+ I+TVD FQG+E++ I
Sbjct: 528 KLLVESGVRASDIGIITPYAAQVTCLK-----MMRNKDTKLKDLEISTVDGFQGREKEAI 582
Query: 76 IMSCVRA-SNHGVGFVADIRRMNVALTRARRALWVV 110
I+S VR+ S VGF++D RRMNVA+TRARR +V
Sbjct: 583 IISMVRSNSKKEVGFLSDHRRMNVAVTRARRQCCLV 618
>Os02g0684150
Length = 375
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 25 GKKASVGIITPYKLQLKCLQREFEEVMSTEDGKDIYINTVDAFQGQERDVIIMSCVRASN 84
G+K VG+++PYK Q++ +Q + T G + + +VD FQG E D+II S VR++
Sbjct: 295 GRKLCVGVVSPYKGQVRAIQERLGKAYETHGGFTVKVRSVDGFQGAEEDIIIFSAVRSNT 354
Query: 85 HG-VGFVADIRRMNVALTRAR 104
G VGF++++ R NVALTRA+
Sbjct: 355 TGSVGFLSNVNRTNVALTRAK 375
>Os03g0160400 Similar to ACL098Cp
Length = 959
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 76/130 (58%), Gaps = 15/130 (11%)
Query: 5 EAQFVLRLYENLQKFLRANGGKKASVGIITPYKLQLKCLQREFEEVMSTEDGKDIYINTV 64
EA V+ + NL R ++A +G+ITPY+ Q+ +++ E T + D+ + +V
Sbjct: 685 EASKVVNIIRNL---TRGGDVREADIGVITPYRQQVVKIKKALE----TFEMPDLKVGSV 737
Query: 65 DAFQGQERDVIIMSCVRAS-NHG-------VGFVADIRRMNVALTRARRALWVVGNAGAL 116
+ FQGQER++II+S VR++ H +GF+++ RR NVA+TRA+ L ++GN +
Sbjct: 738 EQFQGQEREIIIISTVRSTVKHNEFDKFFNLGFLSNHRRFNVAITRAKSLLIIIGNPHII 797
Query: 117 MQSEDWALLI 126
+ W L+
Sbjct: 798 TKDRHWDRLL 807
>AK110123
Length = 1098
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 58/97 (59%), Gaps = 14/97 (14%)
Query: 30 VGIITPYKLQLKCLQREFEEVMSTEDGKD-------------IYINTVDAFQGQERDVII 76
+GI+TPY Q L++ S E + I ++TVD F+G+E+ VI+
Sbjct: 920 IGIVTPYAGQQILLEKMLHNDTSAERRRAAGALGARSSQLGCIDVHTVDGFEGREKKVIL 979
Query: 77 MSCVRASNHG-VGFVADIRRMNVALTRARRALWVVGN 112
S VR + G VGF+AD RR+NVALTRA+ AL+V+GN
Sbjct: 980 FSTVRTNAQGYVGFLADGRRLNVALTRAQSALFVLGN 1016
>Os09g0130800 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 981
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 64/104 (61%), Gaps = 4/104 (3%)
Query: 24 GGKKASVGIITPYKLQLKCLQREFEEVMSTEDGKDIYINTVDAFQGQERDVIIMSCVRAS 83
G ++ + +PY Q++ L+ E+ + + ++T+D+FQG+E D +++S VR++
Sbjct: 847 GVSPTAIAVQSPYIAQVQLLRDRLEDY---PEASGVEVSTIDSFQGREADAVVISMVRSN 903
Query: 84 NHG-VGFVADIRRMNVALTRARRALWVVGNAGALMQSEDWALLI 126
G VGF+ D RRMNVA+TRARR + +V ++ + + A L+
Sbjct: 904 TLGAVGFLGDNRRMNVAITRARRHVALVCDSSTICNNAFLARLL 947
>AK110425
Length = 723
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 10/114 (8%)
Query: 1 QNVHEAQFVLRLYENLQKFLRANGGKKASVGIITPYKLQLKCLQREFEEVMSTED---GK 57
QN+ EA++V+ +Y F+R G A + I+T Y Q K L R+ E + G+
Sbjct: 411 QNLGEAEYVVAVY----SFMRLLGYPAAKISILTTYNGQ-KDLIRDVVEARCAQHPLIGR 465
Query: 58 DIYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVVG 111
+ TVD +QGQ+ D +++S VR VG + D+RR+ VAL+RAR L+V G
Sbjct: 466 PHKVTTVDKYQGQQNDYVLLSLVR--TRVVGHLRDVRRLVVALSRARLGLYVFG 517
>Os02g0704300 Conserved hypothetical protein
Length = 331
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Query: 24 GGKKASVGIITPYKLQLKCLQREFEEVMSTEDGKDIYINTVDAFQGQERDVIIMSCVRAS 83
G ++ + +PY Q++ L+ EE + ++T+D+FQG+E D +++S VR++
Sbjct: 197 GVSPTAIAVQSPYIAQVQLLRERLEEYPGL---SGVEVSTIDSFQGREADAVVISMVRSN 253
Query: 84 NHG-VGFVADIRRMNVALTRARRALWVVGNAGALMQSEDWALLI 126
G VGF+ D RRMNVA+TRA R + VV + + S A L+
Sbjct: 254 PLGAVGFLGDSRRMNVAITRACRHVTVVCDTSTICHSTFLARLL 297
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,852,401
Number of extensions: 215317
Number of successful extensions: 491
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 477
Number of HSP's successfully gapped: 16
Length of query: 195
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 100
Effective length of database: 12,075,471
Effective search space: 1207547100
Effective search space used: 1207547100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)