Os07g0495900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Regulator of nonsense transcripts 1 homolog.
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Os07g0495900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Regulator of nonsense transcripts 1 homolog.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.8 | 0.204 | 12.5 | 0.487 | 0.0593 | -0.462 | 0.32 | -0.0282 | 0.269 | 22.3 | 80 | 1375 | -- | -- |
| 18.8 | 0.202 | 12.5 | 0.489 | 0.0594 | -0.463 | 0.32 | -- | 0.269 | 22.3 | 79.98 | 1375 | -- | -- |
| 19.18 | 0.204 | 12.5 | 0.483 | 0.071 | -0.462 | -- | -0.00254 | 0.263 | 23.8 | 79 | 1356 | -- | -- |
| 19.17 | 0.204 | 12.5 | 0.476 | 0.0674 | -0.462 | -- | -- | 0.268 | 0.0152 | 79.11 | 1356 | -- | -- |
| 19.37 | 0.205 | 12.5 | 0.473 | -- | -0.471 | -- | -0.0231 | 0.266 | -- | 79.61 | 1465 | -- | -- |
| 21.44 | 0.217 | 12.5 | 0.474 | 0.0535 | -- | 0.336 | -- | 0.241 | 21.1 | -- | -- | -- | -- |
| 21.83 | 0.219 | 12.5 | 0.461 | 0.0528 | -- | -- | -- | 0.241 | 22.2 | -- | -- | -- | -- |
| 19.37 | 0.205 | 12.5 | 0.474 | -- | -0.473 | -- | -- | 0.266 | -- | 79.6 | 1468 | -- | -- |
| 25.15 | 0.234 | 12.5 | -- | 0.0692 | -0.414 | -- | -- | 0.214 | 23.8 | 79 | 1358 | -- | -- |
| 22 | 0.219 | 12.5 | 0.462 | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
| 27.44 | 0.245 | 12.5 | -- | 0.0557 | -- | -- | -- | 0.189 | 22.8 | -- | -- | -- | -- |
| 24.48 | 0.23 | 12.5 | -- | -- | -0.481 | -- | -- | 0.225 | -- | 83.02 | 1535 | -- | -- |
| 27.64 | 0.245 | 12.5 | -- | -- | -- | -- | -- | 0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.56 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 2 | 18.56 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 4 | 18.60 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 24 | 18 |
| 8 | 18.61 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 12 | 18.62 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 19 |
| 20 | 18.66 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 35 | 18.68 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 20 |
| 46 | 18.69 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 9 | 13 |
| 49 | 18.70 | humidity | 80.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 64 | 18.72 | humidity | 80.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 74 | 18.72 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 17 |
| 100 | 18.75 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 20 | 4 |
| 101 | 18.75 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 8 |
| 111 | 18.75 | humidity | 80.0 | 1440 | > th | dose dependent | sin | 21 | NA |
| 137 | 18.77 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 143 | 18.77 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 19 | 22 |
| 163 | 18.78 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 24 | 22 |
| 173 | 18.79 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 192 | 18.80 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 219 | 18.81 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 9 | 16 |
| 251 | 18.82 | humidity | 70.0 | 1440 | > th | dose dependent | no | NA | NA |
| 257 | 18.82 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 264 | 18.82 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 311 | 18.84 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 319 | 18.84 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 335 | 18.85 | humidity | 80.0 | 1440 | < th | dose independent | no | NA | NA |
| 342 | 18.85 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 21 |
| 346 | 18.85 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 352 | 18.85 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 13 | 17 |
| 371 | 18.86 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 414 | 18.87 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 417 | 18.87 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 12 | 12 |
| 435 | 18.87 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 462 | 18.88 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 469 | 18.88 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 1 | 16 |
| 485 | 18.89 | humidity | 80.0 | 1440 | > th | dose independent | no | NA | NA |
| 507 | 18.89 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 22 |
| 510 | 18.89 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 554 | 18.90 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 641 | 18.92 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 679 | 18.93 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 697 | 18.94 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 747 | 18.95 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 846 | 18.98 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 850 | 18.98 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 914 | 19.00 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 19 | 4 |
| 923 | 19.00 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 14 | NA |
| 948 | 19.01 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 956 | 19.01 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 18 | 6 |
| 959 | 19.01 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 9 |