Os02g0704300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0704300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.27 | 0.634 | 12.5 | -0.274 | 4.11 | -2.41 | 2.43 | 4.36 | -0.304 | 9.67 | 18.6 | 63 | 18 | 10.6 |
| 193.69 | 0.648 | 12.5 | -0.493 | 4.04 | -2.31 | 1.26 | -- | -0.317 | 9.68 | 18.25 | 62 | 18 | 10.4 |
| 198.68 | 0.656 | 12.5 | -0.468 | 4.01 | -2.41 | -- | 1.86 | -0.366 | 9.65 | 18.1 | 58 | 17.9 | 10.6 |
| 195.94 | 0.652 | 12.5 | -0.664 | 3.89 | -2.45 | -- | -- | -0.47 | 9.7 | 17.48 | 84 | 17.6 | 10.5 |
| 491.82 | 1.03 | 12.5 | 0.936 | -- | -5.35 | -- | 1.47 | 0.134 | -- | 10.83 | 84 | 17.6 | 9.87 |
| 273.28 | 0.775 | 12.6 | -0.923 | 5.18 | -- | 1.76 | -- | -0.675 | 9.91 | -- | -- | -- | -- |
| 285.25 | 0.791 | 12.6 | -0.855 | 5.17 | -- | -- | -- | -0.672 | 9.91 | -- | -- | -- | -- |
| 358.06 | 0.881 | 12.7 | -0.99 | -- | -5.61 | -- | -- | -0.7 | -- | 10.99 | 169 | 16.7 | 9.98 |
| 203.47 | 0.664 | 12.5 | -- | 3.74 | -2.72 | -- | -- | -0.376 | 9.77 | 17.56 | 98 | 17.4 | 10.3 |
| 1886.51 | 2.03 | 12.7 | -0.913 | -- | -- | -- | -- | -0.672 | -- | -- | -- | -- | -- |
| 304.5 | 0.816 | 12.5 | -- | 5.17 | -- | -- | -- | -0.576 | 9.92 | -- | -- | -- | -- |
| 223.81 | 0.697 | 12.6 | -- | -- | -5.73 | -- | -- | -0.531 | -- | 0.9934 | 344 | 14.3 | 10.6 |
| 1908.5 | 2.04 | 12.7 | -- | -- | -- | -- | -- | -0.57 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.65 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 18 | 10 |
| 3 | 194.50 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 18 |
| 6 | 195.82 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 10 |
| 12 | 196.81 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 20 |
| 47 | 203.12 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 11 |
| 49 | 203.58 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 18 |
| 57 | 204.81 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 18 | 18 |
| 81 | 207.43 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 16 |
| 94 | 208.50 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 19 |
| 96 | 208.58 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 11 |
| 104 | 209.15 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 18 | 16 |
| 160 | 212.64 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 18 | 1 |
| 211 | 215.29 | radiation | 1.0 | 30 | < th | dose dependent | sin | 21 | NA |
| 225 | 215.97 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 19 | 10 |
| 244 | 216.97 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 6 |
| 269 | 217.85 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 7 | 14 |
| 277 | 218.07 | radiation | 10.0 | 10 | < th | dose dependent | sin | 16 | NA |
| 281 | 218.25 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 1 |
| 313 | 219.25 | radiation | 1.0 | 30 | < th | dose independent | sin | 20 | NA |
| 326 | 219.41 | radiation | 1.0 | 30 | > th | dose independent | sin | 21 | NA |
| 335 | 219.54 | temperature | 20.0 | 270 | > th | dose independent | rect. | 16 | 4 |
| 336 | 219.56 | humidity | 80.0 | 10 | < th | dose independent | rect. | 12 | 6 |
| 338 | 219.60 | temperature | 20.0 | 270 | > th | dose dependent | sin | 13 | NA |
| 381 | 220.57 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 399 | 220.85 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 409 | 221.20 | humidity | 80.0 | 270 | < th | dose independent | rect. | 11 | 4 |
| 415 | 221.27 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 422 | 221.41 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 480 | 222.25 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 23 |
| 481 | 222.25 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 484 | 222.31 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 506 | 222.47 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 3 |
| 513 | 222.54 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 519 | 222.59 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 18 |
| 522 | 222.69 | wind | 7.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 523 | 222.74 | wind | 5.0 | 90 | < th | dose independent | rect. | 18 | 1 |
| 572 | 223.14 | temperature | 30.0 | 270 | < th | dose dependent | sin | 14 | NA |
| 573 | 223.16 | temperature | 20.0 | 1440 | > th | dose independent | sin | 10 | NA |
| 575 | 223.18 | wind | 5.0 | 90 | < th | dose independent | rect. | 17 | 4 |
| 675 | 223.85 | temperature | 20.0 | 1440 | < th | dose independent | sin | 10 | NA |
| 742 | 224.32 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 751 | 224.39 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 6 |
| 791 | 224.74 | humidity | 80.0 | 270 | < th | dose independent | rect. | 12 | 2 |
| 831 | 224.99 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 11 | 10 |
| 844 | 225.07 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 15 | 20 |
| 854 | 225.12 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 8 |
| 905 | 225.42 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 13 |
| 908 | 225.43 | radiation | 1.0 | 30 | < th | dose independent | rect. | 7 | 14 |
| 914 | 225.47 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 921 | 225.49 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 929 | 225.54 | radiation | 10.0 | 90 | < th | dose independent | rect. | 18 | 1 |
| 957 | 225.64 | humidity | 70.0 | 270 | > th | dose independent | rect. | 19 | 11 |
| 963 | 225.67 | temperature | 10.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 966 | 225.67 | humidity | 50.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 967 | 225.67 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 968 | 225.67 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 18 | 1 |
| 974 | 225.67 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 23 |
| 983 | 225.75 | radiation | 10.0 | 270 | > th | dose independent | rect. | 11 | 4 |