Os09g0130800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os09g0130800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.49 | 0.411 | 12.3 | -1.33 | 2.11 | 1.31 | 2.35 | 1.1 | -0.423 | 12 | 25.6 | 281 | -- | -- |
| 78.17 | 0.412 | 12.2 | -1.17 | 2.11 | 1.24 | 2.31 | -- | -0.384 | 12 | 25.8 | 264 | -- | -- |
| 99.14 | 0.464 | 12.3 | -1.2 | 2.04 | 1.29 | -- | 0.835 | -0.396 | 12 | 25.7 | 370 | -- | -- |
| 99.49 | 0.465 | 12.2 | -1.1 | 2.13 | 1.19 | -- | -- | -0.39 | 12 | 25.3 | 252 | -- | -- |
| 279.94 | 0.779 | 12.3 | -1.26 | -- | 2.39 | -- | 2.51 | -0.302 | -- | 29.4 | 873 | -- | -- |
| 99.85 | 0.468 | 12.3 | -1.47 | 2.02 | -- | 2.22 | -- | -0.645 | 11.7 | -- | -- | -- | -- |
| 121.19 | 0.516 | 12.3 | -1.38 | 2.01 | -- | -- | -- | -0.635 | 11.7 | -- | -- | -- | -- |
| 286.44 | 0.788 | 12.2 | -0.799 | -- | 2.3 | -- | -- | -0.216 | -- | 29.82 | 872 | -- | -- |
| 105.66 | 0.479 | 12.2 | -- | 1.99 | 1.34 | -- | -- | -0.172 | 11.7 | 22.02 | 46339 | -- | -- |
| 375.73 | 0.906 | 12.3 | -1.43 | -- | -- | -- | -- | -0.659 | -- | -- | -- | -- | -- |
| 171.04 | 0.612 | 12.3 | -- | 2.03 | -- | -- | -- | -0.482 | 11.7 | -- | -- | -- | -- |
| 300.24 | 0.807 | 12.2 | -- | -- | 2.67 | -- | -- | -0.0631 | -- | 30.1 | 887 | -- | -- |
| 429.86 | 0.968 | 12.3 | -- | -- | -- | -- | -- | -0.5 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.82 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 10 |
| 4 | 72.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 11 |
| 6 | 72.21 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 11 | 72.41 | temperature | 20 | 270 | > th | dose dependent | sin | 11 | NA |
| 14 | 72.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 14 |
| 29 | 73.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 16 |
| 46 | 74.21 | temperature | 25 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 106 | 75.07 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 10 |
| 134 | 75.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 173 | 75.74 | temperature | 25 | 270 | < th | dose dependent | rect. | 4 | 22 |
| 193 | 75.89 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 10 |
| 205 | 75.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 242 | 76.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 306 | 76.64 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 475 | 77.70 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 12 |
| 554 | 78.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 707 | 78.69 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 753 | 78.88 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 8 |
| 792 | 78.99 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 6 |
| 818 | 79.09 | temperature | 20 | 30 | > th | dose independent | sin | 12 | NA |
| 845 | 79.19 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 16 |
| 850 | 79.22 | temperature | 20 | 10 | < th | dose independent | sin | 11 | NA |
| 903 | 79.37 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 911 | 79.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 20 |
| 932 | 79.46 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 950 | 79.52 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 9 |