Os04g0599600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0599600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.34 | 0.405 | 8.22 | 0.196 | 0.518 | -0.719 | 0.025 | 0.0153 | -0.292 | 17.9 | 1014 | 4297 | -- | -- |
| 74.34 | 0.402 | 8.22 | 0.193 | 0.517 | -0.719 | 0.022 | -- | -0.292 | 17.9 | 1014 | 4297 | -- | -- |
| 74.34 | 0.402 | 8.22 | 0.195 | 0.518 | -0.719 | -- | 0.0133 | -0.292 | 17.9 | 1014 | 4297 | -- | -- |
| 74.34 | 0.402 | 8.22 | 0.192 | 0.518 | -0.718 | -- | -- | -0.292 | 17.9 | 1014 | 4297 | -- | -- |
| 88.12 | 0.437 | 8.21 | 0.186 | -- | -0.779 | -- | 0.0627 | -0.298 | -- | 1014 | 4175 | -- | -- |
| 87.85 | 0.439 | 8.24 | 0.0874 | 0.546 | -- | -0.0316 | -- | -0.4 | 17.9 | -- | -- | -- | -- |
| 87.86 | 0.439 | 8.24 | 0.0877 | 0.545 | -- | -- | -- | -0.4 | 17.9 | -- | -- | -- | -- |
| 88.13 | 0.437 | 8.21 | 0.173 | -- | -0.775 | -- | -- | -0.301 | -- | 1014 | 4175 | -- | -- |
| 75.17 | 0.404 | 8.23 | -- | 0.516 | -0.714 | -- | -- | -0.321 | 17.9 | 1014 | 4189 | -- | -- |
| 103.28 | 0.475 | 8.24 | 0.0711 | -- | -- | -- | -- | -0.413 | -- | -- | -- | -- | -- |
| 88.06 | 0.439 | 8.25 | -- | 0.544 | -- | -- | -- | -0.41 | 17.9 | -- | -- | -- | -- |
| 88.82 | 0.439 | 8.22 | -- | -- | -0.766 | -- | -- | -0.325 | -- | 1014 | 4119 | -- | -- |
| 103.41 | 0.475 | 8.24 | -- | -- | -- | -- | -- | -0.421 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.08 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 2 | 71.13 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 3 | 71.15 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 4 | 71.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 7 | 71.29 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 8 | 71.29 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 11 | 71.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 17 | 72.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 18 | 72.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 19 | 72.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 35 | 72.64 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 41 | 72.96 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 42 | 72.96 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 57 | 73.41 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 62 | 73.48 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 63 | 73.48 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 94 | 74.15 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 99 | 74.25 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 108 | 74.51 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 119 | 74.68 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 3 | 9 |
| 121 | 74.71 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 127 | 74.76 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 134 | 74.80 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 9 | 8 |
| 148 | 74.86 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 154 | 74.88 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 22 | NA |
| 161 | 74.90 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 164 | 74.90 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 11 | 4 |
| 172 | 74.92 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 176 | 74.93 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 7 | 4 |
| 182 | 74.95 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 183 | 74.95 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 11 | 4 |
| 184 | 74.95 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 199 | 74.99 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 7 | 15 |
| 200 | 75.00 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 203 | 75.00 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 210 | 75.01 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 11 | 10 |
| 213 | 75.02 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 11 | 10 |
| 239 | 75.07 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 247 | 75.09 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 252 | 75.10 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 21 | NA |
| 255 | 75.11 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 21 | NA |
| 351 | 75.24 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 369 | 75.27 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 472 | 75.40 | atmosphere | 1015.0 | 4320 | > th | dose dependent | no | NA | NA |
| 474 | 75.40 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 22 | 23 |
| 497 | 75.43 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 19 | 23 |
| 506 | 75.44 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 17 | 23 |
| 515 | 75.45 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 523 | 75.47 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 530 | 75.48 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 553 | 75.50 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 561 | 75.51 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 6 |
| 564 | 75.51 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 6 |
| 605 | 75.58 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 647 | 75.62 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 649 | 75.63 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 650 | 75.63 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 23 | 5 |
| 653 | 75.63 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 658 | 75.63 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 8 |
| 681 | 75.67 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 727 | 75.72 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 6 |
| 733 | 75.73 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 756 | 75.77 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 801 | 75.81 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 822 | 75.84 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 837 | 75.85 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 862 | 75.88 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 882 | 75.90 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 889 | 75.90 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 897 | 75.92 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 938 | 75.94 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 18 | 20 |
| 999 | 75.99 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 8 | 6 |