Os03g0586900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Putative DNA helicase family protein.
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Os03g0586900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Putative DNA helicase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.15 | 0.266 | 9.76 | -0.183 | 0.581 | 0.563 | 0.00204 | 1.4 | -0.617 | 19.4 | 75.14 | 6291 | -- | -- |
| 34.9 | 0.275 | 9.76 | -0.306 | 0.636 | 0.63 | 0.127 | -- | -0.655 | 19.4 | 74.37 | 7349 | -- | -- |
| 32.15 | 0.264 | 9.76 | -0.183 | 0.58 | 0.563 | -- | 1.4 | -0.617 | 19.4 | 75.16 | 6292 | -- | -- |
| 34.94 | 0.275 | 9.76 | -0.321 | 0.634 | 0.63 | -- | -- | -0.661 | 19.5 | 74.33 | 7349 | -- | -- |
| 49.04 | 0.326 | 9.74 | -0.186 | -- | 0.771 | -- | 1.05 | -0.673 | -- | 74 | 6366 | -- | -- |
| 41.89 | 0.303 | 9.71 | -0.38 | 0.641 | -- | 0.118 | -- | -0.455 | 19.4 | -- | -- | -- | -- |
| 41.93 | 0.303 | 9.71 | -0.383 | 0.641 | -- | -- | -- | -0.455 | 19.4 | -- | -- | -- | -- |
| 50.45 | 0.331 | 9.75 | -0.317 | -- | 0.846 | -- | -- | -0.723 | -- | 75 | 6389 | -- | -- |
| 37.54 | 0.285 | 9.76 | -- | 0.638 | 0.665 | -- | -- | -0.645 | 19.4 | 74.15 | 7342 | -- | -- |
| 63.83 | 0.373 | 9.69 | -0.393 | -- | -- | -- | -- | -0.465 | -- | -- | -- | -- | -- |
| 45.79 | 0.317 | 9.7 | -- | 0.645 | -- | -- | -- | -0.412 | 19.3 | -- | -- | -- | -- |
| 53.13 | 0.339 | 9.75 | -- | -- | 0.939 | -- | -- | -0.732 | -- | 74.36 | 6390 | -- | -- |
| 67.91 | 0.385 | 9.68 | -- | -- | -- | -- | -- | -0.421 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.41 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 2 | 30.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 3 | 30.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 4 | 30.57 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 13 |
| 5 | 30.80 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 8 | 30.91 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 21 | 31.11 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 29 | 31.21 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 30 | 31.21 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 39 | 31.32 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 40 | 31.32 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 42 | 31.37 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 49 | 31.46 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 51 | 31.51 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 53 | 31.52 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 56 | 31.52 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 16 |
| 57 | 31.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 16 |
| 67 | 31.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 71 | 31.61 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 72 | 31.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 74 | 31.63 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 76 | 31.63 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 80 | 31.64 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 83 | 31.65 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 104 | 31.71 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 105 | 31.71 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 109 | 31.73 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 115 | 31.77 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 121 | 31.79 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 122 | 31.79 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 123 | 31.79 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 125 | 31.79 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 127 | 31.80 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 129 | 31.81 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 132 | 31.82 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 143 | 31.85 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 144 | 31.85 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 8 |
| 145 | 31.86 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 146 | 31.86 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 154 | 31.89 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 156 | 31.89 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 160 | 31.89 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 161 | 31.89 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 165 | 31.90 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 170 | 31.91 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 186 | 31.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 198 | 31.96 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 200 | 31.96 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 202 | 31.97 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 203 | 31.97 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 206 | 31.97 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 207 | 31.98 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 224 | 32.02 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 226 | 32.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 228 | 32.02 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 231 | 32.03 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 248 | 32.07 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 6 |
| 305 | 32.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 308 | 32.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 10 |
| 310 | 32.18 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 319 | 32.19 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 336 | 32.22 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 342 | 32.23 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 343 | 32.23 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 358 | 32.26 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 5 |
| 360 | 32.26 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 2 | NA |
| 364 | 32.26 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 5 |
| 373 | 32.29 | wind | 3.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 392 | 32.34 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 396 | 32.34 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 411 | 32.38 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 484 | 32.52 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 489 | 32.52 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 506 | 32.54 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 17 |
| 530 | 32.59 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 538 | 32.60 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 551 | 32.63 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 563 | 32.65 | wind | 1.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 564 | 32.65 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 610 | 32.71 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 611 | 32.71 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 616 | 32.71 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 7 |
| 617 | 32.71 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 8 |
| 622 | 32.72 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 629 | 32.72 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 6 |
| 637 | 32.73 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 739 | 32.85 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 784 | 32.92 | wind | 1.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 905 | 33.07 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 919 | 33.09 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 13 | 2 |