BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0487600 Os09g0487600|Os09g0487600
         (452 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0487600  Virulence factor, pectin lyase fold family pro...   822   0.0  
Os03g0833800  Virulence factor, pectin lyase fold family pro...    91   2e-18
Os09g0439400  Virulence factor, pectin lyase fold family pro...    84   3e-16
Os08g0107300  Virulence factor, pectin lyase fold family pro...    82   8e-16
Os12g0554800  Similar to Polygalacturonase-like protein            79   6e-15
Os02g0256100  Virulence factor, pectin lyase fold family pro...    77   4e-14
Os07g0245200  Similar to Polygalacturonase-like protein            76   6e-14
Os11g0658800  Virulence factor, pectin lyase fold family pro...    69   7e-12
Os02g0781000  Virulence factor, pectin lyase fold family pro...    69   7e-12
Os01g0172900                                                       66   5e-11
>Os09g0487600 Virulence factor, pectin lyase fold family protein
          Length = 452

 Score =  822 bits (2123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/393 (100%), Positives = 393/393 (100%)

Query: 60  RVLLPAPGDYLTATVHLRSRVVLDVAPGARLLGGTRQADYPPESRRWYVVLAENTTGAGV 119
           RVLLPAPGDYLTATVHLRSRVVLDVAPGARLLGGTRQADYPPESRRWYVVLAENTTGAGV
Sbjct: 60  RVLLPAPGDYLTATVHLRSRVVLDVAPGARLLGGTRQADYPPESRRWYVVLAENTTGAGV 119

Query: 120 TGGGEINGQGGAFVVTPNPQKNIMVSWNATGDCEGDECRPRLVGFIDSKDVTIHDITLNQ 179
           TGGGEINGQGGAFVVTPNPQKNIMVSWNATGDCEGDECRPRLVGFIDSKDVTIHDITLNQ
Sbjct: 120 TGGGEINGQGGAFVVTPNPQKNIMVSWNATGDCEGDECRPRLVGFIDSKDVTIHDITLNQ 179

Query: 180 PAYWWCDNTMIHNVSIYGDFDTPNNDGIDIEDSNNTAITHCHIDTGDDAICPKSTTGPVY 239
           PAYWWCDNTMIHNVSIYGDFDTPNNDGIDIEDSNNTAITHCHIDTGDDAICPKSTTGPVY
Sbjct: 180 PAYWWCDNTMIHNVSIYGDFDTPNNDGIDIEDSNNTAITHCHIDTGDDAICPKSTTGPVY 239

Query: 240 NLTATNCWIRTKSCAIKFGSASFFDFKKLVFDNITIVDSHRGLGMQIRDGGNVSDVVFSN 299
           NLTATNCWIRTKSCAIKFGSASFFDFKKLVFDNITIVDSHRGLGMQIRDGGNVSDVVFSN
Sbjct: 240 NLTATNCWIRTKSCAIKFGSASFFDFKKLVFDNITIVDSHRGLGMQIRDGGNVSDVVFSN 299

Query: 300 IKMSTRYYHPLWWGRAEPIYITTCPRHPDSKEGTISDIQFINISSVSENGVFLAGSKHGL 359
           IKMSTRYYHPLWWGRAEPIYITTCPRHPDSKEGTISDIQFINISSVSENGVFLAGSKHGL
Sbjct: 300 IKMSTRYYHPLWWGRAEPIYITTCPRHPDSKEGTISDIQFINISSVSENGVFLAGSKHGL 359

Query: 360 LRNLKFKNVDLTYKRWTNYSGGLYDYRPGCQKMVKHRTGGMMLEHISGLEIDNVRMRWSR 419
           LRNLKFKNVDLTYKRWTNYSGGLYDYRPGCQKMVKHRTGGMMLEHISGLEIDNVRMRWSR
Sbjct: 360 LRNLKFKNVDLTYKRWTNYSGGLYDYRPGCQKMVKHRTGGMMLEHISGLEIDNVRMRWSR 419

Query: 420 GSLKGWDVDPLLFQPSTVDKLSFHDWQSLAVSR 452
           GSLKGWDVDPLLFQPSTVDKLSFHDWQSLAVSR
Sbjct: 420 GSLKGWDVDPLLFQPSTVDKLSFHDWQSLAVSR 452
>Os03g0833800 Virulence factor, pectin lyase fold family protein
          Length = 476

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 121/282 (42%), Gaps = 50/282 (17%)

Query: 60  RVLLPAPGDYLTATVHLRSRVVLDVAPGARLLGGTRQADYP--------------PESRR 105
           ++ +PA G +LT +  L S + L +   A ++G    +D+P              P  R 
Sbjct: 79  QLFVPA-GRWLTGSFSLISHLTLSLDKDAEIIGSPDSSDWPVIDPLPSYGRGRELPGKRH 137

Query: 106 WYVVLAENTTGAGVTGG-GEINGQGGAFVVTPNPQKNIMVSWNATGDCEGDECRPRLVGF 164
             ++   N T   +TG  G I+GQG  +             W+       +  RP LV  
Sbjct: 138 QSLIFGTNLTDVIITGANGTIDGQGAIW-------------WDWFHSNTLNYTRPHLVEL 184

Query: 165 IDSKDVTIHDITLNQPAYW-----WCDNTMIHNVSIYGDFDTPNNDGIDIEDSNNTAITH 219
           + S DV I ++T     +W     +C   ++ +V+I    ++PN DGID + S N  I H
Sbjct: 185 MYSTDVVISNLTFKNSPFWNIHPVYCSQVLVQHVTILAPLNSPNTDGIDPDSSTNVCIDH 244

Query: 220 CHIDTGDDAICPKST--------TGPVYNLTATNCWIRTKSCA-IKFGSASFFDFKKLVF 270
           C++  GDD I  KS           P  N++ +N    T+  A I FGS       ++  
Sbjct: 245 CYVRNGDDVIVIKSGWDEYGISFARPSTNISISNITGETRGGAGIAFGSEMSGGISEVRA 304

Query: 271 DNITIVDSHRGLGMQIRDGGN-------VSDVVFSNIKMSTR 305
           + + IV+S  G+ ++   G         +SDV   N+ M+ R
Sbjct: 305 EGLRIVNSMHGIRIKTAPGRGGYVKNVYISDVSMDNVSMAIR 346
>Os09g0439400 Virulence factor, pectin lyase fold family protein
          Length = 526

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 148/349 (42%), Gaps = 60/349 (17%)

Query: 60  RVLLPAPGDYLTATVHLRSRVVLDVAPGARLLGGTRQADYPPES--------------RR 105
           R+++PA G +LTA  +L SR+ L +A GA +LG   +  +P  S              R 
Sbjct: 144 RLVVPA-GRWLTAPFNLTSRMTLFLAAGAEILGVQDERYWPLMSPLPSYGYGREHRGPRY 202

Query: 106 WYVVLAENTTGAGVTG-GGEINGQGGAFVVTPNPQKNIMVSWNATGDCEGDECRPRLVGF 164
             ++  ++     +TG  G INGQG ++             W+       +  R  LV  
Sbjct: 203 GSLIHGQDLKDVTITGQNGTINGQGQSW-------------WSKFRKKVLNHTRGPLVQL 249

Query: 165 IDSKDVTIHDITLNQPAYWW-----CDNTMIHNVSIYGDF-DTPNNDGIDIEDSNNTAIT 218
           + S ++TI +ITL    +W      C +  I + +I       PN DGID +   N  I 
Sbjct: 250 MRSSNITISNITLRDSPFWTLHIYDCKDVTISDTTILAPIVGAPNTDGIDPDSCENVVIK 309

Query: 219 HCHIDTGDDAICPKS--------TTGPVYNLTATNCWIRTK-SCAIKFGSASFFDFKKLV 269
           +C+I  GDD I  KS           P  N+   N  IR+  S  +  GS        ++
Sbjct: 310 NCYISVGDDGIAIKSGWDQYGIAYGRPSTNIIIHNVTIRSMVSAGVSIGSEMSGGVSNVL 369

Query: 270 FDNITIVDSHRGLGMQIRD--GGNVSDVVFSNIKMSTRYYHPLWWGRAEPIYITTCPRHP 327
            +N+ I DS RG+ ++     G  VS++ + NI +           R   +  T    HP
Sbjct: 370 VENVHIWDSRRGVRIKTAPGRGAYVSNITYRNITLEHI--------RVGIVIKTDYNEHP 421

Query: 328 DS--KEGTISDIQFINISSVSENG----VFLAGSKHGLLRNLKFKNVDL 370
           D       +  I+ I+ SS+  +G    V + GS    ++N+ F ++ +
Sbjct: 422 DEGFDPKAVPIIENISYSSIHGHGVRVPVRIQGSAEIPVKNVTFHDMSV 470
>Os08g0107300 Virulence factor, pectin lyase fold family protein
          Length = 482

 Score = 82.0 bits (201), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 164/375 (43%), Gaps = 56/375 (14%)

Query: 60  RVLLPAPGDYLTATVHLRSRVVLDVAPGARLLGGTRQADYP-----PE---------SRR 105
           R+ +P PG ++T + +L SR  L +  GA +LG     ++P     P           R 
Sbjct: 116 RLEVP-PGRWVTGSFNLTSRFTLFLHHGAIILGSQDPEEWPLIAPLPSYGRGRERLGPRH 174

Query: 106 WYVVLAENTTGAGVTGG-GEINGQGGAFVVTPNPQKNIMVSWNATGDCEGDECRPRLVGF 164
             ++  E      +TG  G I+GQG              + W+   +   +  R  L+  
Sbjct: 175 ISLIHGEGLDDVVITGNNGTIDGQG-------------RIWWDLWWNRTLNHTRGHLIEL 221

Query: 165 IDSKDVTIHDITLNQPAYW-----WCDNTMIHNVSIYGDFDTPNNDGIDIEDSNNTAITH 219
           +DS ++ I +ITL    +W     +C N +I N+++    + PN DGID + S+   I  
Sbjct: 222 VDSTNIMISNITLRNSPFWTVHPVYCRNVVIRNLTVLAPLNAPNTDGIDPDSSSEVCIED 281

Query: 220 CHIDTGDDAICPK--------STTGPVYNLTATNCWIRTKSCA-IKFGSASFFDFKKLVF 270
           C+I++GDD +  K        S   P  N+        T +C+ + FGS        ++ 
Sbjct: 282 CYIESGDDLVAVKSGWDQYGISVGKPSSNIIIQRVSGTTPTCSGVGFGSEMSGGISNVII 341

Query: 271 DNITIVDSHRGLGMQ--IRDGGNVSDVVFSNIKMSTRYYHPLWWGRAEPIYITTCPRHPD 328
            ++ + +S + + ++  +  GG ++++   N++M  +   P+ + R    +  +  ++  
Sbjct: 342 RDLHVWNSAQAVRIKTDVGRGGYITNITIENVRME-KVKVPIRFSRGADDH--SDDKYDR 398

Query: 329 SKEGTISDIQFINISSVSENGVFLAGSKHG-LLRNLKFKNVDLT----YKRWTNYS--GG 381
           S    ISD++  ++  V      +  + HG +   + F+NV LT      RW   S  G 
Sbjct: 399 SALPKISDVRIRDVVGVDLQRAPMLEAVHGAVYEGICFRNVSLTVIKRQDRWHCESVYGE 458

Query: 382 LYDYRPG-CQKMVKH 395
            +D  P  C++  ++
Sbjct: 459 AHDVLPAPCEEFRRN 473
>Os12g0554800 Similar to Polygalacturonase-like protein
          Length = 424

 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 119/267 (44%), Gaps = 44/267 (16%)

Query: 67  GDYLTATVHLRSRVVLDVAPGARLLGGTRQADYP--------------PESRRWYVVLAE 112
           G +LT + +L S + + +   A ++G    +++P              P +R   ++   
Sbjct: 52  GRWLTGSFNLTSHLTIFLEKDAVIIGAKEVSEWPIVEPLPSYGQGIDLPGARHRSLINGH 111

Query: 113 NTTGAGVTGG-GEINGQGGAFVVTPNPQKNIMVSWNATGDCEGDECRPRLVGFIDSKDVT 171
           N T   +TG  G I+GQG             +  WN     + +  RP LV F+DS+D+ 
Sbjct: 112 NVTDVVITGNNGIIDGQG-------------LTWWNWFRSNKLNYSRPHLVEFVDSEDIV 158

Query: 172 IHDITL-NQPAYW----WCDNTMIHNVSIYGDFDTPNNDGIDIEDSNNTAITHCHIDTGD 226
           I ++TL N PA+     +C N M+H+V+I    D P  DGI  +  +N  I    I    
Sbjct: 159 ISNLTLLNSPAWGIHPVFCSNVMVHDVTIRTSLDAPLTDGIVPDSCSNMCIEDSSISVAH 218

Query: 227 DAICPKS-------TTG-PVYNLTATNCWIRTK-SCAIKFGSASFFDFKKLVFDNITIVD 277
           DAI  KS       T G P  ++  +   ++     A+ FGS        +  D++ I  
Sbjct: 219 DAISLKSGWDNYGITIGRPASDIHISRVDLQASLGAALAFGSEMSGGISDIHVDHLNIHG 278

Query: 278 SHRGLGMQIRD--GGNVSDVVFSNIKM 302
           S RG+  +     GG + DVV S+++M
Sbjct: 279 SSRGILFKTAPGRGGYIRDVVISDVQM 305
>Os02g0256100 Virulence factor, pectin lyase fold family protein
          Length = 443

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 118/274 (43%), Gaps = 44/274 (16%)

Query: 61  VLLPAPGDYLTATVHLRSRVVLDVAPGARLLGGTRQADYP--------------PESRRW 106
           +L+PA G +LT + +L S + L +A GA L        +P              P +R  
Sbjct: 80  LLVPA-GTWLTGSFNLTSHMTLFLARGAVLKATQETRSWPLAEPLPSYGRGRELPGARYT 138

Query: 107 YVVLAENTTGAGVTG-GGEINGQGGAFVVTPNPQKNIMVSWNATGDCEGDECRPRLVGFI 165
             +  +      +TG  G I+GQG  +             WN          RP L+ F+
Sbjct: 139 SFIHGDGLRDIVITGDKGIIDGQGDVW-------------WNMWRQRTLQHTRPNLLEFM 185

Query: 166 DSKDVTIHDITLNQPAYW-----WCDNTMIHNVSIYGDFDTPNNDGIDIEDSNNTAITHC 220
            S  + I +I L    +W     +CDN +I N+ I    D+PN DG+D + S N  I   
Sbjct: 186 HSSGIHISNIVLKNSPFWNIHPVYCDNVVITNMMIIAPHDSPNTDGVDPDSSTNVCIEDS 245

Query: 221 HIDTGDDAICPKS---TTGPVYNLTATNCWIR-----TKSCAIKFGSASFFDFKKLVFDN 272
           +I TGDD +  KS     G  Y   ++   IR     +    I  GS +      ++ ++
Sbjct: 246 YISTGDDLVAIKSGWDEYGIAYGRPSSGITIRRVRGSSPFSGIAIGSEASGGVSNVLVED 305

Query: 273 ITIVDSHRGLGMQ--IRDGGNVSDVVFSNIKMST 304
            +I +S  G+ ++  I  GG + ++   N++M++
Sbjct: 306 CSIFNSGYGIHIKTNIGRGGFIRNITVDNVRMNS 339
>Os07g0245200 Similar to Polygalacturonase-like protein
          Length = 446

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 145/352 (41%), Gaps = 61/352 (17%)

Query: 60  RVLLPAPGDYLTATVHLRSRVVLDVAPGARLLGGTRQADYP--------------PESRR 105
            + +PA G +LT + +L S + + +   A ++G    +D+P              P  R 
Sbjct: 49  ELFVPA-GRWLTGSFNLISHLTVSLDADAVIIGSQDSSDWPVIDPLPSYGRGRELPGKRH 107

Query: 106 WYVVLAENTTGAGVTGG-GEINGQGGAFVVTPNPQKNIMVSWNATGDCEGDECRPRLVGF 164
             ++   N T   +TG  G I+GQG  +             WN   +   +  RP L+  
Sbjct: 108 QSLIFGSNLTDVIITGANGTIDGQGELW-------------WNWFHNHTLNYTRPPLLEL 154

Query: 165 IDSKDVTIHDITLNQPAYW-----WCDNTMIHNVSIYGDFDTPNNDGIDIEDSNNTAITH 219
           + S  V I ++T     +W     +C   ++ +++I     +PN DGID + S+N  I  
Sbjct: 155 MYSDRVVISNLTFMNAPFWNIHPVYCSQVLVQHLTILAPISSPNTDGIDPDSSSNVCIED 214

Query: 220 CHIDTGDDAICPKST--------TGPVYNLTATNCWIRTKSCA-IKFGSASFFDFKKLVF 270
           C+I  GDD +  KS           P  N++  N   +T++ A I FGS        +  
Sbjct: 215 CYIRNGDDIVVIKSGWDEYGISFAHPSSNISIRNITGQTRNSAGIAFGSEMSGGISDVRA 274

Query: 271 DNITIVDSHRGLGMQIRD--GGNVSDVVFSNIKMSTRYYHPLWWGRAEPIYIT-TCPRHP 327
           + +  ++S  G+ ++     GG V ++  +++ M            +  I IT     HP
Sbjct: 275 EGLRFINSVHGIRIKTAPGRGGYVKNIYIADVSMDN---------VSIAIRITGNYGEHP 325

Query: 328 D-----SKEGTISDIQFINISSVSENGV-FLAGSKHGLLRNLKFKNVDLTYK 373
           D     +    IS+I   N+  V+      L G +  +  N+   NV L+ K
Sbjct: 326 DDNYDKNALPVISNITIKNVVGVNIGTAGMLLGIQGDIFSNICLSNVSLSSK 377
>Os11g0658800 Virulence factor, pectin lyase fold family protein
          Length = 449

 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 118/271 (43%), Gaps = 44/271 (16%)

Query: 67  GDYLTATVHLRSRVVLDVAPGARLLGGTRQADYP--------------PESRRWYVVLAE 112
           G +LT + +L S + L +   A ++G    + +P              P  R   ++   
Sbjct: 77  GRWLTGSFNLTSHLTLFLEEEAVIIGTKDPSQWPIVEPLPSYGQGLDLPGPRHRSLINGY 136

Query: 113 NTTGAGVTGG-GEINGQGGAFVVTPNPQKNIMVSWNATGDCEGDECRPRLVGFIDSKDVT 171
           N +   +TG  G I+GQG  +             W+     E +  RP +V F+ S++V 
Sbjct: 137 NLSDVVITGNNGVIDGQGSVW-------------WDWLHSHELNHSRPHIVEFLHSEEVV 183

Query: 172 IHDIT-LNQPAY----WWCDNTMIHNVSIYGDFDTPNNDGIDIEDSNNTAITHCHIDTGD 226
           I ++T LN PA+     +C N  +HNV+I    D P  DGI  +  +N  I    I  G 
Sbjct: 184 ISNLTFLNSPAWSIHPVYCSNVKVHNVTIKTSLDAPLTDGIVPDSCSNVCIEDSSISVGH 243

Query: 227 DAICPKS-------TTG-PVYNLTATNCWIRTKS-CAIKFGSASFFDFKKLVFDNITIVD 277
           DAI  KS       + G P  ++  +   ++  S  A+  GS        +  D+I I  
Sbjct: 244 DAISLKSGWDNYGISFGRPTSDIHISRVDLQASSGAALAIGSEMSGGISDIHVDHIRIGS 303

Query: 278 SHRGLGMQIRD--GGNVSDVVFSNIKMSTRY 306
           S +G+  +     GG +++VV +++ M + +
Sbjct: 304 SSKGISFRTTPGRGGYIAEVVVADVVMDSVH 334
>Os02g0781000 Virulence factor, pectin lyase fold family protein
          Length = 285

 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 103/242 (42%), Gaps = 33/242 (13%)

Query: 158 RPRLVGFIDSKDVTIHDITLNQPAYWW-----CDNTMIHNVSIYGDFDT-PNNDGIDIED 211
           RP L+  + SKD+ + +ITL    +W      C N  + NV+I     + PN DGID + 
Sbjct: 2   RPPLLQLMWSKDIIVANITLKNSPFWHFHPYDCTNITVSNVTILAPISSAPNTDGIDPDS 61

Query: 212 SNNTAITHCHIDTGDDAICPKS---TTGPVYNLTATNCWIRT------KSCAIKFGSASF 262
             +  I +C+I  GDDAI  KS     G  Y   + N  IR        S  I  GS   
Sbjct: 62  CQDVLIENCYISVGDDAIAVKSGWDQYGIAYGRPSRNIVIRNVMARSLVSAGISIGSEMS 121

Query: 263 FDFKKLVFDNITIVDSHRGLGMQ--IRDGGNVSDVVFSNIKMSTRYYHPLWWGRAEPIYI 320
                +  +++ I +S RGL ++  I  GG + D+ + NI             RA  +  
Sbjct: 122 GGIANVTVEDVRIWESRRGLRIKTAIGRGGYIRDISYRNITFDNV--------RAGIVIK 173

Query: 321 TTCPRHPDS--KEGTISDIQFINISSVSENGVFLAGSKHGL----LRNLKFKN--VDLTY 372
                H D         DI  I+   +   GV +    HG     ++++ F++  + ++Y
Sbjct: 174 VDYNEHADDGYDRDAFPDITNISFKEIHGRGVRVPVRAHGSSDIPIKDISFQDMSIGISY 233

Query: 373 KR 374
           K+
Sbjct: 234 KK 235
>Os01g0172900 
          Length = 457

 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 30/236 (12%)

Query: 158 RPRLVGFIDSKDVTIHDITLNQPA-----YWWCDNTMIHNVSIYGDFDTPNNDGIDIEDS 212
           RP ++ F    ++++ +I L   A      + C    +HNV+I    D+PN DGI +  S
Sbjct: 210 RPVILAFAACNNLSVTNIHLTNSADKHMTVYRCSQVHVHNVTIVAPGDSPNTDGITMAIS 269

Query: 213 NNTAITHCHIDTGDDAICPKSTTGPVYNLTATNCWIRTKSCAIKFGSASFFD---FKKLV 269
           ++  I++C I +GDD +   S T  V N+T   C        I  GS   F+    +++ 
Sbjct: 270 DHVYISNCSIQSGDDCVSMLSYTTDV-NITDITC---GPGHGISVGSLGRFETALVERIT 325

Query: 270 FDNITIVDSHRGLGMQIRDG--GNVSDVVFSNIKMSTRYYHPLWWGRAEPIYITT--CPR 325
             N   + +  G+ ++   G  G  +  +F NI M+             PI I    CP+
Sbjct: 326 VSNCNFIGTKNGVRIKSWQGGMGQATGFIFENINMT---------AVESPIIIDQFYCPQ 376

Query: 326 -HPDSKEG--TISDIQFINI--SSVSENGVFLAGSKHGLLRNLKFKNVDLTYKRWT 376
            +   K+G   ISD +FINI  +S  +  + +  S+    + +   N++L+++  T
Sbjct: 377 GNCPLKDGGVAISDARFINIRGTSSEQEAIKILCSQSVHCQGIYLSNINLSWENHT 432
  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.138    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,872,697
Number of extensions: 753082
Number of successful extensions: 1882
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1873
Number of HSP's successfully gapped: 13
Length of query: 452
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 348
Effective length of database: 11,605,545
Effective search space: 4038729660
Effective search space used: 4038729660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)