Os09g0487600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os09g0487600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.54 | 0.44 | 8.81 | -1.3 | 0.535 | -1.53 | -1.11 | -1.73 | -0.377 | 16.5 | 31.05 | 695 | -- | -- |
| 89.91 | 0.442 | 8.84 | -1.61 | 0.412 | -1.6 | -1.28 | -- | -0.428 | 16.2 | 32.97 | 568 | -- | -- |
| 90.36 | 0.443 | 8.81 | -1.32 | 0.594 | -1.42 | -- | -1.51 | -0.37 | 16.8 | 31.5 | 783 | -- | -- |
| 92.36 | 0.448 | 8.85 | -1.6 | 0.43 | -1.53 | -- | -- | -0.432 | 17.6 | 31.99 | 543 | -- | -- |
| 98.55 | 0.462 | 8.84 | -1.58 | -- | -1.9 | -- | -0.558 | -0.46 | -- | 51.74 | 473 | -- | -- |
| 120.22 | 0.514 | 8.8 | -1.24 | 0.815 | -- | -0.146 | -- | -0.193 | 18.3 | -- | -- | -- | -- |
| 120.26 | 0.514 | 8.8 | -1.24 | 0.815 | -- | -- | -- | -0.194 | 18.3 | -- | -- | -- | -- |
| 98.73 | 0.463 | 8.85 | -1.67 | -- | -1.92 | -- | -- | -0.484 | -- | 64.89 | 455 | -- | -- |
| 152.16 | 0.575 | 8.79 | -- | 0.612 | -0.813 | -- | -- | -0.156 | 18.2 | 38.9 | 466 | -- | -- |
| 154.7 | 0.581 | 8.79 | -1.26 | -- | -- | -- | -- | -0.211 | -- | -- | -- | -- | -- |
| 160.51 | 0.593 | 8.77 | -- | 0.832 | -- | -- | -- | -0.0561 | 18.2 | -- | -- | -- | -- |
| 166.74 | 0.601 | 8.79 | -- | -- | -1.35 | -- | -- | -0.229 | -- | 42.91 | 417 | -- | -- |
| 196.41 | 0.654 | 8.75 | -- | -- | -- | -- | -- | -0.0718 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 2 | 85.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 8 | 86.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 9 | 86.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 21 |
| 13 | 86.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 19 | 86.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 33 | 86.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 22 |
| 107 | 87.76 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 108 | 87.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 131 | 87.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 138 | 88.03 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 140 | 88.04 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 152 | 88.17 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 155 | 88.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 168 | 88.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 185 | 88.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 219 | 88.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 225 | 88.78 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 235 | 88.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 236 | 88.87 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 244 | 88.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 311 | 89.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 343 | 89.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 389 | 89.94 | temperature | 15 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 446 | 90.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 10 |
| 670 | 90.71 | temperature | 10 | 1440 | > th | dose dependent | sin | 22 | NA |
| 805 | 90.99 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 6 |
| 832 | 91.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 841 | 91.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 916 | 91.15 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 926 | 91.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 933 | 91.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 19 |
| 942 | 91.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 17 |
| 944 | 91.18 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 945 | 91.18 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 4 |
| 963 | 91.20 | temperature | 30 | 1440 | < th | dose independent | sin | 19 | NA |
| 968 | 91.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 974 | 91.21 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 8 |