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Os08g0107300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Virulence factor, pectin lyase fold family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.01 (0.0149) R2 : 0.113
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.24 (0.0314) R2dN8 : 0.147 R2N8 : 0.113
σ : 0.281
deviance : 36.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.89 0.199 9 -0.296 0.49 -0.368 -0.222 -1.31 -0.231 2.89 4.16 5401 -- --
20.14 0.209 9 -0.227 0.492 -0.369 -0.102 -- -0.198 2.75 3.58 5404 -- --
18.05 0.198 9 -0.295 0.491 -0.369 -- -1.37 -0.231 2.9 4.152 5407 -- --
20.14 0.209 9 -0.23 0.496 -0.375 -- -- -0.199 2.71 2.655 5432 -- --
21.97 0.218 8.98 -0.131 -- -0.794 -- -0.555 -0.136 -- 1.97 4888 -- --
22.66 0.223 9.01 -0.131 0.488 -- -0.275 -- -0.267 3.71 -- -- -- --
22.87 0.224 9.01 -0.127 0.488 -- -- -- -0.265 3.83 -- -- -- --
22.16 0.219 8.98 -0.0301 -- -0.756 -- -- -0.132 -- 1.96 4836 -- --
19.97 0.208 8.99 -- 0.508 -0.391 -- -- -0.191 2.75 2.53 5437 -- --
35.98 0.28 9.01 -0.107 -- -- -- -- -0.252 -- -- -- -- --
23.29 0.226 9.01 -- 0.486 -- -- -- -0.251 3.84 -- -- -- --
22.12 0.219 9.01 -- -- -0.499 -- -- -0.225 -- 5.13 472 -- --
36.28 0.281 9.01 -- -- -- -- -- -0.24 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.83 humidity 90 43200 > th dose independent rect. 16 1
2 17.85 humidity 90 43200 > th dose dependent rect. 8 9
5 17.88 humidity 90 43200 > th dose independent rect. 15 3
11 17.90 humidity 90 43200 > th dose dependent rect. 9 2
17 17.93 humidity 90 43200 < th dose independent rect. 16 1
25 17.95 humidity 90 43200 > th dose independent rect. 9 9
44 18.00 humidity 90 43200 < th dose independent rect. 15 3
48 18.00 humidity 90 43200 < th dose independent rect. 10 8
55 18.02 humidity 90 43200 < th dose independent rect. 10 4
60 18.02 humidity 90 43200 > th dose dependent sin 23 NA
63 18.02 temperature 25 43200 < th dose dependent rect. 16 8
67 18.03 humidity 90 43200 > th dose independent rect. 9 6
71 18.03 humidity 90 43200 < th dose independent rect. 2 16
74 18.03 temperature 30 43200 < th dose dependent rect. 15 1
75 18.03 temperature 25 43200 < th dose dependent rect. 20 1
76 18.03 temperature 25 43200 < th dose dependent rect. 23 1
79 18.03 temperature 25 43200 < th dose dependent rect. 20 4
80 18.03 temperature 25 43200 < th dose dependent rect. 18 5
82 18.03 temperature 25 43200 < th dose dependent rect. 15 6
89 18.03 humidity 90 43200 > th dose dependent rect. 13 7
111 18.04 temperature 25 43200 < th dose dependent sin 14 NA
116 18.04 temperature 10 43200 > th dose dependent rect. 23 1
118 18.04 temperature 25 43200 < th dose dependent rect. 18 1
168 18.04 temperature 25 43200 < th dose dependent rect. 5 19
170 18.05 temperature 25 14400 < th dose independent rect. 2 1
171 18.05 temperature 25 14400 > th dose independent rect. 23 2
175 18.05 humidity 90 43200 < th dose independent rect. 12 6
179 18.05 humidity 90 43200 > th dose independent rect. 2 16
181 18.05 temperature 25 43200 < th dose dependent sin 12 NA
185 18.05 temperature 25 43200 < th dose dependent no NA NA
186 18.05 temperature 10 43200 > th dose dependent rect. 16 1
233 18.05 temperature 25 43200 < th dose dependent rect. 2 17
234 18.05 temperature 25 43200 < th dose dependent rect. 4 17
303 18.05 temperature 25 43200 < th dose dependent rect. 20 21
353 18.06 atmosphere 1010 43200 < th dose independent rect. 7 1
354 18.06 temperature 25 14400 < th dose independent rect. 23 4
364 18.06 temperature 25 43200 < th dose dependent sin 10 NA
396 18.06 humidity 90 43200 > th dose dependent rect. 13 5
407 18.06 temperature 10 43200 > th dose dependent rect. 16 8
445 18.06 temperature 25 43200 < th dose dependent rect. 4 13
525 18.06 temperature 25 43200 < th dose dependent rect. 22 18
567 18.07 temperature 10 43200 > th dose dependent sin 12 NA
573 18.07 temperature 25 43200 < th dose dependent sin 7 NA
595 18.07 humidity 90 43200 > th dose dependent rect. 16 1
596 18.07 atmosphere 1005 43200 > th dose dependent rect. 3 1
639 18.07 radiation 1 43200 < th dose dependent rect. 12 6
680 18.07 temperature 25 43200 < th dose dependent rect. 2 10
906 18.08 temperature 25 43200 > th dose independent rect. 16 1
907 18.08 radiation 1 43200 > th dose independent rect. 15 1
908 18.08 radiation 1 43200 < th dose independent rect. 15 1
910 18.08 temperature 25 14400 > th dose independent rect. 23 4
918 18.08 temperature 10 43200 > th dose dependent sin 9 NA
925 18.08 temperature 10 43200 > th dose dependent no NA NA
941 18.08 temperature 10 43200 > th dose dependent rect. 5 1
946 18.08 temperature 10 43200 > th dose dependent rect. 20 1
949 18.08 temperature 25 43200 < th dose dependent rect. 5 1
974 18.08 temperature 25 43200 < th dose dependent rect. 5 4