Os02g0781000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os02g0781000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 233.23 | 0.718 | 6.54 | -2.43 | 0.744 | -2.51 | -0.298 | -1.31 | -0.201 | 20 | 25.28 | 308 | -- | -- |
| 235.33 | 0.714 | 6.57 | -2.65 | 0.709 | -2.4 | -0.213 | -- | -0.252 | 20.2 | 25.67 | 304 | -- | -- |
| 233.49 | 0.712 | 6.55 | -2.44 | 0.742 | -2.51 | -- | -1.23 | -0.205 | 20 | 25.3 | 308 | -- | -- |
| 235.38 | 0.715 | 6.57 | -2.64 | 0.718 | -2.41 | -- | -- | -0.261 | 20.1 | 25.63 | 305 | -- | -- |
| 252.6 | 0.74 | 6.55 | -2.57 | -- | -2.69 | -- | -0.76 | -0.304 | -- | 27.42 | 385 | -- | -- |
| 319.77 | 0.838 | 6.46 | -2.02 | 1.02 | -- | -0.145 | -- | 0.253 | 18.9 | -- | -- | -- | -- |
| 319.82 | 0.837 | 6.46 | -2.02 | 1.02 | -- | -- | -- | 0.252 | 18.9 | -- | -- | -- | -- |
| 253.14 | 0.741 | 6.57 | -2.71 | -- | -2.66 | -- | -- | -0.337 | -- | 27.67 | 394 | -- | -- |
| 399.5 | 0.931 | 6.45 | -- | 0.803 | -1.27 | -- | -- | 0.252 | 19.1 | 25.91 | 312 | -- | -- |
| 374.32 | 0.904 | 6.44 | -2.04 | -- | -- | -- | -- | 0.233 | -- | -- | -- | -- | -- |
| 427.01 | 0.967 | 6.41 | -- | 1.04 | -- | -- | -- | 0.477 | 18.8 | -- | -- | -- | -- |
| 428.33 | 0.964 | 6.46 | -- | -- | -1.71 | -- | -- | 0.162 | -- | 29.4 | 372 | -- | -- |
| 483.9 | 1.03 | 6.39 | -- | -- | -- | -- | -- | 0.459 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 218.81 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 27 | 229.28 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 29 | 229.63 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 33 | 230.34 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 40 | 230.96 | temperature | 20 | 270 | < th | dose dependent | sin | 0 | NA |
| 45 | 231.90 | temperature | 25 | 270 | < th | dose dependent | sin | 5 | NA |
| 52 | 232.45 | temperature | 20 | 270 | < th | dose dependent | rect. | 4 | 13 |
| 54 | 232.54 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 80 | 233.56 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 90 | 234.02 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 102 | 235.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 123 | 235.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 141 | 236.59 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 142 | 236.60 | temperature | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 234 | 239.25 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 238 | 239.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 294 | 240.48 | temperature | 15 | 1440 | > th | dose independent | rect. | 6 | 5 |
| 301 | 240.73 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 13 |
| 333 | 241.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 426 | 242.87 | temperature | 15 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 674 | 246.05 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 687 | 246.32 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 15 |
| 710 | 246.77 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 722 | 246.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 752 | 247.32 | temperature | 15 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 763 | 247.45 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 804 | 248.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 805 | 248.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 848 | 248.82 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 18 |
| 929 | 250.09 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 9 |
| 934 | 250.17 | temperature | 20 | 270 | < th | dose independent | sin | 2 | NA |
| 947 | 250.43 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 12 |