Os07g0245200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Polygalacturonase-like protein.
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Os07g0245200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Polygalacturonase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.86 | 0.488 | 10.2 | -0.317 | 2.81 | -2.41 | -0.274 | 1.47 | 0.259 | 22.4 | 23 | 809 | -- | -- |
| 110.42 | 0.489 | 10.2 | -0.126 | 2.82 | -2.61 | -0.604 | -- | 0.266 | 22.4 | 22.95 | 787 | -- | -- |
| 108.08 | 0.484 | 10.2 | -0.32 | 2.81 | -2.38 | -- | 1.65 | 0.261 | 22.4 | 23 | 784 | -- | -- |
| 111.62 | 0.492 | 10.2 | -0.146 | 2.82 | -2.67 | -- | -- | 0.293 | 22.4 | 22.87 | 775 | -- | -- |
| 495.68 | 1.04 | 10.3 | -1.2 | -- | -3.87 | -- | 3.92 | -0.2 | -- | 29.77 | 775 | -- | -- |
| 197.36 | 0.659 | 10.1 | 0.553 | 3.07 | -- | -0.742 | -- | 0.709 | 22.4 | -- | -- | -- | -- |
| 199.61 | 0.662 | 10.1 | 0.583 | 3.08 | -- | -- | -- | 0.711 | 22.4 | -- | -- | -- | -- |
| 501.93 | 1.04 | 10.2 | -0.523 | -- | -4.08 | -- | -- | -0.122 | -- | 28.93 | 788 | -- | -- |
| 111.89 | 0.493 | 10.2 | -- | 2.81 | -2.61 | -- | -- | 0.298 | 22.4 | 22.9 | 775 | -- | -- |
| 779.52 | 1.3 | 10 | 0.635 | -- | -- | -- | -- | 0.723 | -- | -- | -- | -- | -- |
| 208.57 | 0.676 | 10.1 | -- | 3.08 | -- | -- | -- | 0.646 | 22.4 | -- | -- | -- | -- |
| 508.16 | 1.05 | 10.2 | -- | -- | -3.88 | -- | -- | -0.0291 | -- | 29 | 782 | -- | -- |
| 790.14 | 1.31 | 10 | -- | -- | -- | -- | -- | 0.652 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 18 |
| 22 | 108.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 51 | 109.55 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 69 | 110.22 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 18 |
| 72 | 110.33 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 20 |
| 96 | 110.87 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 99 | 110.91 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 100 | 110.92 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 21 |
| 192 | 112.72 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 197 | 112.80 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 225 | 113.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 9 |
| 238 | 113.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 250 | 113.40 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 374 | 114.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 378 | 115.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 418 | 115.45 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 452 | 115.71 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 479 | 115.96 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 484 | 116.00 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 496 | 116.06 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 518 | 116.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 546 | 116.40 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 23 |
| 604 | 116.86 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 767 | 118.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 4 |
| 780 | 118.12 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 839 | 118.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 907 | 118.90 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |