Os02g0256100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os02g0256100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 357.51 | 0.888 | 4.31 | -1.85 | 3.31 | -2.98 | -2.33 | 0.75 | -0.64 | 8.67 | 17.05 | 73 | 21.8 | -- |
| 357.47 | 0.881 | 4.33 | -1.82 | 3.17 | -2.87 | -2.12 | -- | -0.634 | 8.98 | 14.27 | 72 | 21.2 | -- |
| 370.9 | 0.897 | 4.34 | -1.89 | 3 | -2.87 | -- | 0.298 | -0.673 | 9.17 | 11.8 | 70 | 20.9 | -- |
| 370.35 | 0.896 | 4.33 | -1.88 | 3 | -2.85 | -- | -- | -0.664 | 9.21 | 12.29 | 60 | 20.8 | -- |
| 501.6 | 1.04 | 4.42 | -1.99 | -- | -2.55 | -- | 2.03 | -0.58 | -- | 24.17 | 6 | 7.17 | -- |
| 487.84 | 1.04 | 4.32 | -1.86 | 2.71 | -- | -1.47 | -- | -0.547 | 11 | -- | -- | -- | -- |
| 496.99 | 1.04 | 4.33 | -1.92 | 2.71 | -- | -- | -- | -0.551 | 11.1 | -- | -- | -- | -- |
| 496.36 | 1.04 | 4.39 | -1.94 | -- | -2.67 | -- | -- | -0.57 | -- | 116 | 3 | 7 | -- |
| 459.82 | 0.999 | 4.29 | -- | 2.92 | -2.94 | -- | -- | -0.462 | 9.32 | 10 | 66 | 20.6 | -- |
| 955.48 | 1.44 | 4.39 | -1.99 | -- | -- | -- | -- | -0.573 | -- | -- | -- | -- | -- |
| 594.5 | 1.14 | 4.28 | -- | 2.73 | -- | -- | -- | -0.337 | 11.1 | -- | -- | -- | -- |
| 594.26 | 1.14 | 4.34 | -- | -- | -2.71 | -- | -- | -0.344 | -- | 192.9 | 4 | 6.94 | -- |
| 1059.54 | 1.52 | 4.34 | -- | -- | -- | -- | -- | -0.352 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 365.29 | radiation | 20 | 90 | < th | dose dependent | sin | 4 | NA |
| 32 | 377.86 | radiation | 20 | 90 | < th | dose dependent | rect. | 3 | 11 |
| 37 | 378.29 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 13 |
| 41 | 379.18 | radiation | 20 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 50 | 382.05 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 55 | 382.78 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 18 |
| 76 | 384.95 | radiation | 10 | 30 | < th | dose independent | sin | 3 | NA |
| 78 | 385.19 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 13 |
| 100 | 387.57 | radiation | 10 | 30 | < th | dose independent | rect. | 3 | 15 |
| 103 | 387.64 | radiation | 10 | 90 | < th | dose independent | rect. | 3 | 11 |
| 111 | 387.89 | radiation | 30 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 146 | 389.59 | radiation | 10 | 90 | > th | dose independent | sin | 4 | NA |
| 148 | 389.64 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 17 |
| 159 | 390.14 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 167 | 390.56 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 182 | 390.85 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 9 |
| 197 | 391.00 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 204 | 391.21 | radiation | 1 | 30 | > th | dose dependent | sin | 5 | NA |
| 248 | 392.28 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 23 |
| 295 | 393.75 | radiation | 10 | 10 | < th | dose independent | rect. | 1 | 19 |
| 407 | 396.56 | radiation | 10 | 10 | < th | dose independent | rect. | 13 | 21 |
| 429 | 397.21 | radiation | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 440 | 397.40 | radiation | 10 | 10 | < th | dose independent | rect. | 16 | 22 |
| 486 | 398.30 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 488 | 398.33 | radiation | 10 | 10 | < th | dose independent | no | NA | NA |
| 505 | 398.71 | radiation | 10 | 10 | < th | dose independent | rect. | 9 | 23 |
| 578 | 399.98 | humidity | 70 | 10 | > th | dose dependent | rect. | 3 | 12 |
| 637 | 401.16 | humidity | 70 | 10 | > th | dose dependent | sin | 5 | NA |
| 646 | 401.28 | radiation | 10 | 10 | < th | dose independent | rect. | 23 | 23 |
| 855 | 403.91 | radiation | 1 | 30 | > th | dose dependent | rect. | 6 | 10 |
| 901 | 404.36 | humidity | 70 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 904 | 404.42 | radiation | 10 | 270 | < th | dose independent | rect. | 23 | 10 |
| 911 | 404.51 | humidity | 70 | 10 | > th | dose dependent | rect. | 1 | 14 |
| 928 | 404.74 | radiation | 1 | 270 | < th | dose independent | rect. | 24 | 7 |
| 932 | 404.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 18 |
| 934 | 404.77 | radiation | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 955 | 404.93 | radiation | 1 | 30 | > th | dose dependent | rect. | 6 | 8 |
| 981 | 405.10 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 24 | 5 |