Os09g0439400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os09g0439400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.41 | 0.255 | 10.9 | 0.434 | 0.518 | 0.25 | -0.453 | 0.288 | 0.155 | 1.08 | 24.2 | 55 | -- | -- |
| 29.83 | 0.254 | 10.9 | 0.501 | 0.518 | 0.251 | -0.318 | -- | 0.152 | 1.08 | 24.2 | 51 | -- | -- |
| 30.14 | 0.256 | 10.9 | 0.468 | 0.531 | 0.254 | -- | 0.193 | 0.151 | 1.04 | 24.3 | 63 | -- | -- |
| 30.16 | 0.256 | 10.9 | 0.534 | 0.519 | 0.253 | -- | -- | 0.185 | 1.08 | 24.21 | 54 | -- | -- |
| 42.18 | 0.302 | 10.9 | 0.548 | -- | 0.423 | -- | 0.193 | 0.152 | -- | 26.42 | 33 | -- | -- |
| 34.02 | 0.273 | 10.9 | 0.443 | 0.642 | -- | -0.251 | -- | 0.0433 | 1.46 | -- | -- | -- | -- |
| 34.27 | 0.274 | 10.9 | 0.451 | 0.642 | -- | -- | -- | 0.0447 | 1.47 | -- | -- | -- | -- |
| 42.19 | 0.303 | 10.9 | 0.604 | -- | 0.461 | -- | -- | 0.323 | -- | 24.7 | 37 | -- | -- |
| 37.25 | 0.284 | 10.9 | -- | 0.542 | 0.193 | -- | -- | 0.106 | 1.19 | 24.7 | 38 | -- | -- |
| 59.6 | 0.361 | 10.9 | 0.477 | -- | -- | -- | -- | 0.0585 | -- | -- | -- | -- | -- |
| 39.64 | 0.295 | 11 | -- | 0.65 | -- | -- | -- | -0.00557 | 1.49 | -- | -- | -- | -- |
| 50.64 | 0.331 | 10.9 | -- | -- | 0.451 | -- | -- | 0.264 | -- | 25 | 29 | -- | -- |
| 65.6 | 0.378 | 10.9 | -- | -- | -- | -- | -- | 0.00555 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.70 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 3 | 28.94 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 4 | 28.94 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 5 | 28.96 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 10 | 29.00 | wind | 5.0 | 90 | < th | dose independent | rect. | 6 | 23 |
| 11 | 29.03 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 17 |
| 12 | 29.03 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 14 | 29.04 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 20 | 29.11 | temperature | 25.0 | 30 | > th | dose independent | rect. | 23 | 21 |
| 32 | 29.17 | temperature | 25.0 | 30 | < th | dose independent | rect. | 24 | 19 |
| 64 | 29.25 | temperature | 25.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 69 | 29.27 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 81 | 29.32 | wind | 5.0 | 90 | < th | dose independent | rect. | 6 | 20 |
| 102 | 29.37 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 21 |
| 133 | 29.44 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 160 | 29.52 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 180 | 29.56 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 22 |
| 184 | 29.58 | wind | 5.0 | 90 | < th | dose independent | rect. | 21 | 23 |
| 191 | 29.59 | temperature | 25.0 | 30 | < th | dose independent | rect. | 10 | 22 |
| 203 | 29.61 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 210 | 29.62 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 229 | 29.67 | wind | 5.0 | 90 | > th | dose independent | rect. | 11 | 22 |
| 230 | 29.67 | temperature | 25.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 235 | 29.67 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 237 | 29.68 | wind | 5.0 | 90 | < th | dose independent | rect. | 7 | 12 |
| 242 | 29.68 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 251 | 29.70 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 252 | 29.71 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 259 | 29.71 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 267 | 29.72 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 271 | 29.73 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 294 | 29.76 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 309 | 29.78 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 311 | 29.79 | wind | 7.0 | 720 | < th | dose independent | rect. | 21 | 21 |
| 313 | 29.79 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 317 | 29.80 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 324 | 29.80 | wind | 3.0 | 90 | > th | dose dependent | rect. | 11 | 22 |
| 342 | 29.82 | temperature | 25.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 343 | 29.82 | temperature | 25.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 345 | 29.82 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 349 | 29.82 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 20 |
| 352 | 29.83 | temperature | 25.0 | 30 | < th | dose independent | no | NA | NA |
| 354 | 29.83 | wind | 7.0 | 720 | < th | dose independent | rect. | 14 | 19 |
| 363 | 29.83 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 367 | 29.84 | wind | 7.0 | 720 | < th | dose independent | rect. | 13 | 22 |
| 369 | 29.84 | temperature | 25.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 370 | 29.84 | temperature | 25.0 | 30 | < th | dose independent | rect. | 17 | 23 |
| 380 | 29.84 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 381 | 29.85 | temperature | 25.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 392 | 29.86 | temperature | 25.0 | 30 | < th | dose independent | rect. | 19 | 23 |
| 399 | 29.87 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 402 | 29.87 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 406 | 29.87 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 409 | 29.88 | wind | 5.0 | 90 | < th | dose independent | rect. | 13 | 23 |
| 410 | 29.88 | temperature | 25.0 | 30 | < th | dose independent | rect. | 7 | 23 |
| 422 | 29.89 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 433 | 29.90 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 470 | 29.94 | temperature | 25.0 | 30 | > th | dose independent | rect. | 23 | 13 |
| 487 | 29.96 | temperature | 25.0 | 90 | < th | dose independent | rect. | 11 | 19 |
| 495 | 29.97 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 514 | 29.99 | temperature | 25.0 | 30 | > th | dose independent | rect. | 6 | 23 |
| 530 | 30.00 | wind | 1.0 | 90 | > th | dose dependent | rect. | 11 | 10 |
| 543 | 30.01 | wind | 5.0 | 90 | < th | dose independent | rect. | 15 | 23 |
| 566 | 30.03 | temperature | 25.0 | 30 | > th | dose independent | no | NA | NA |
| 567 | 30.03 | wind | 7.0 | 720 | < th | dose independent | rect. | 15 | 10 |
| 574 | 30.03 | temperature | 25.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 583 | 30.04 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 589 | 30.04 | temperature | 25.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 601 | 30.04 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 641 | 30.07 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 644 | 30.08 | wind | 5.0 | 90 | > th | dose independent | rect. | 23 | 22 |
| 658 | 30.09 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 12 |
| 689 | 30.11 | wind | 3.0 | 90 | > th | dose dependent | rect. | 1 | 20 |
| 690 | 30.11 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 694 | 30.12 | temperature | 25.0 | 30 | < th | dose independent | sin | 4 | NA |
| 696 | 30.12 | wind | 5.0 | 90 | > th | dose independent | rect. | 1 | 20 |
| 712 | 30.13 | wind | 5.0 | 90 | < th | dose independent | no | NA | NA |
| 714 | 30.13 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 717 | 30.13 | temperature | 25.0 | 30 | > th | dose independent | rect. | 16 | 20 |
| 729 | 30.14 | wind | 5.0 | 90 | > th | dose independent | no | NA | NA |
| 737 | 30.14 | wind | 5.0 | 90 | > th | dose independent | rect. | 7 | 23 |
| 750 | 30.15 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 753 | 30.15 | wind | 5.0 | 90 | > th | dose independent | rect. | 19 | 23 |
| 757 | 30.15 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 18 |
| 788 | 30.17 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 22 |
| 791 | 30.18 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 818 | 30.19 | wind | 1.0 | 90 | > th | dose dependent | rect. | 11 | 12 |
| 820 | 30.19 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 14 |
| 831 | 30.20 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 877 | 30.22 | wind | 5.0 | 90 | > th | dose independent | rect. | 17 | 23 |
| 879 | 30.22 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 7 |
| 889 | 30.22 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 907 | 30.23 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 930 | 30.24 | wind | 7.0 | 720 | < th | dose independent | rect. | 13 | 13 |
| 944 | 30.24 | temperature | 25.0 | 30 | > th | dose independent | rect. | 1 | 23 |
| 975 | 30.26 | wind | 7.0 | 720 | < th | dose independent | rect. | 13 | 5 |
| 981 | 30.26 | wind | 5.0 | 90 | > th | dose independent | rect. | 5 | 23 |
| 984 | 30.26 | humidity | 90.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 989 | 30.26 | wind | 7.0 | 90 | < th | dose dependent | rect. | 6 | 20 |