Os11g0658800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os11g0658800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147 | 0.57 | 5.96 | 1.9 | 2.64 | 1.82 | 0.879 | 3.5 | 0.85 | 7.13 | 4.755 | 543 | -- | -- |
| 149.79 | 0.57 | 5.93 | 1.82 | 2.68 | 1.04 | 0.794 | -- | 0.868 | 7.14 | 3.215 | 585 | -- | -- |
| 148.88 | 0.568 | 5.96 | 1.94 | 2.65 | 1.97 | -- | 3.57 | 0.854 | 7.08 | 4.953 | 512 | -- | -- |
| 150.2 | 0.571 | 5.93 | 1.86 | 2.67 | 1.18 | -- | -- | 0.864 | 7.11 | 3.843 | 551 | -- | -- |
| 464.45 | 1 | 6.02 | 1.88 | -- | 1.55 | -- | 3.75 | 0.919 | -- | 8.208 | 1179 | -- | -- |
| 159.35 | 0.592 | 5.94 | 1.62 | 2.41 | -- | 0.967 | -- | 0.843 | 7.03 | -- | -- | -- | -- |
| 161.78 | 0.596 | 5.94 | 1.64 | 2.42 | -- | -- | -- | 0.84 | 7 | -- | -- | -- | -- |
| 458.17 | 1 | 6 | 1.54 | -- | -0.765 | -- | -- | 0.858 | -- | 3.843 | 551 | -- | -- |
| 230.57 | 0.707 | 5.98 | -- | 2.48 | 1.05 | -- | -- | 0.668 | 6.95 | 10.41 | 464 | -- | -- |
| 469.2 | 1.01 | 5.99 | 1.69 | -- | -- | -- | -- | 0.885 | -- | -- | -- | -- | -- |
| 232.73 | 0.714 | 5.98 | -- | 2.44 | -- | -- | -- | 0.658 | 6.96 | -- | -- | -- | -- |
| 411.7 | 0.945 | 6.01 | -- | -- | -2.66 | -- | -- | 0.804 | -- | -1.065 | 336 | -- | -- |
| 544.5 | 1.09 | 6.04 | -- | -- | -- | -- | -- | 0.697 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.99 | wind | 7.0 | 720 | < th | dose independent | rect. | 6 | 21 |
| 3 | 145.04 | wind | 7.0 | 720 | < th | dose independent | rect. | 13 | 22 |
| 4 | 145.14 | wind | 7.0 | 720 | < th | dose independent | rect. | 15 | 19 |
| 5 | 145.32 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 12 |
| 10 | 146.12 | radiation | 40.0 | 10 | > th | dose independent | rect. | 14 | 22 |
| 11 | 146.13 | wind | 7.0 | 720 | < th | dose independent | rect. | 8 | 10 |
| 13 | 146.28 | radiation | 40.0 | 10 | > th | dose independent | rect. | 9 | 3 |
| 32 | 146.46 | wind | 9.0 | 720 | < th | dose independent | rect. | 13 | 14 |
| 33 | 146.47 | wind | 7.0 | 720 | < th | dose independent | rect. | 6 | 14 |
| 34 | 146.50 | wind | 7.0 | 720 | < th | dose independent | rect. | 24 | 18 |
| 35 | 146.57 | wind | 7.0 | 720 | < th | dose independent | rect. | 22 | 20 |
| 36 | 146.58 | wind | 7.0 | 720 | < th | dose independent | rect. | 6 | 12 |
| 69 | 146.97 | temperature | 20.0 | 90 | > th | dose independent | rect. | 6 | 22 |
| 73 | 147.10 | wind | 7.0 | 720 | < th | dose independent | rect. | 15 | 3 |
| 80 | 147.25 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 19 | 11 |
| 83 | 147.31 | wind | 5.0 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 86 | 147.35 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 98 | 147.60 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 13 |
| 104 | 147.68 | wind | 9.0 | 720 | < th | dose independent | rect. | 15 | 10 |
| 105 | 147.68 | temperature | 20.0 | 30 | > th | dose independent | rect. | 24 | 12 |
| 106 | 147.74 | wind | 9.0 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 107 | 147.77 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 135 | 147.86 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 11 |
| 139 | 147.89 | radiation | 10.0 | 720 | < th | dose independent | rect. | 3 | 4 |
| 141 | 147.92 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 24 | 12 |
| 144 | 147.93 | temperature | 30.0 | 90 | < th | dose dependent | sin | 9 | NA |
| 171 | 148.06 | wind | 9.0 | 720 | < th | dose dependent | rect. | 22 | 20 |
| 210 | 148.14 | temperature | 10.0 | 90 | > th | dose dependent | sin | 9 | NA |
| 217 | 148.20 | wind | 5.0 | 90 | < th | dose independent | rect. | 15 | 12 |
| 241 | 148.24 | wind | 7.0 | 720 | < th | dose independent | rect. | 22 | 14 |
| 244 | 148.25 | wind | 7.0 | 720 | < th | dose independent | rect. | 11 | 23 |
| 256 | 148.32 | wind | 5.0 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 276 | 148.35 | wind | 5.0 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 281 | 148.37 | wind | 7.0 | 720 | > th | dose independent | rect. | 20 | 19 |
| 286 | 148.41 | wind | 9.0 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 292 | 148.44 | temperature | 20.0 | 30 | > th | dose independent | rect. | 22 | 14 |
| 295 | 148.46 | wind | 5.0 | 720 | > th | dose dependent | rect. | 11 | 4 |
| 305 | 148.55 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 310 | 148.57 | wind | 7.0 | 720 | > th | dose independent | rect. | 18 | 21 |
| 314 | 148.58 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 315 | 148.58 | wind | 9.0 | 270 | < th | dose dependent | rect. | 14 | 12 |
| 321 | 148.60 | wind | 9.0 | 720 | < th | dose dependent | rect. | 6 | 21 |
| 331 | 148.65 | temperature | 25.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 333 | 148.67 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 334 | 148.68 | temperature | 25.0 | 720 | < th | dose independent | rect. | 17 | 13 |
| 338 | 148.70 | temperature | 25.0 | 270 | < th | dose independent | rect. | 19 | 12 |
| 379 | 148.84 | humidity | 60.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 388 | 148.86 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 404 | 148.90 | wind | 9.0 | 720 | < th | dose dependent | rect. | 15 | 3 |
| 418 | 148.95 | temperature | 25.0 | 720 | > th | dose independent | rect. | 9 | 1 |
| 479 | 149.07 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 494 | 149.13 | wind | 7.0 | 720 | > th | dose independent | rect. | 1 | 14 |
| 530 | 149.19 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 22 | 14 |
| 560 | 149.22 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 14 | 19 |
| 566 | 149.24 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 577 | 149.25 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 589 | 149.27 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 602 | 149.31 | wind | 7.0 | 720 | < th | dose independent | rect. | 6 | 6 |
| 604 | 149.31 | radiation | 10.0 | 720 | < th | dose independent | rect. | 18 | 13 |
| 616 | 149.34 | temperature | 25.0 | 720 | < th | dose independent | rect. | 17 | 6 |
| 622 | 149.35 | wind | 5.0 | 270 | < th | dose independent | rect. | 22 | 12 |
| 623 | 149.35 | temperature | 20.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 625 | 149.35 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 634 | 149.36 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 14 | 21 |
| 643 | 149.39 | wind | 7.0 | 720 | > th | dose independent | sin | 4 | NA |
| 644 | 149.39 | temperature | 25.0 | 720 | < th | dose independent | sin | 14 | NA |
| 645 | 149.39 | wind | 5.0 | 720 | > th | dose dependent | sin | 3 | NA |
| 668 | 149.42 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 672 | 149.43 | wind | 5.0 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 681 | 149.45 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 23 |
| 692 | 149.48 | wind | 7.0 | 720 | < th | dose independent | sin | 23 | NA |
| 697 | 149.48 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 12 | 12 |
| 725 | 149.52 | wind | 9.0 | 720 | < th | dose dependent | rect. | 6 | 6 |
| 728 | 149.53 | wind | 7.0 | 720 | > th | dose independent | rect. | 7 | 8 |
| 775 | 149.57 | wind | 7.0 | 720 | < th | dose independent | rect. | 21 | 6 |
| 776 | 149.57 | wind | 9.0 | 720 | < th | dose independent | rect. | 11 | 16 |
| 800 | 149.59 | wind | 1.0 | 30 | > th | dose dependent | rect. | 12 | 20 |
| 804 | 149.60 | wind | 5.0 | 720 | > th | dose dependent | no | NA | NA |
| 825 | 149.62 | wind | 5.0 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 849 | 149.65 | wind | 5.0 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 852 | 149.66 | humidity | 60.0 | 10 | > th | dose independent | rect. | 12 | 12 |
| 860 | 149.67 | wind | 9.0 | 720 | < th | dose dependent | rect. | 14 | 20 |
| 927 | 149.75 | temperature | 25.0 | 270 | < th | dose independent | sin | 11 | NA |
| 936 | 149.76 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 11 | 2 |
| 940 | 149.76 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 959 | 149.78 | temperature | 20.0 | 30 | > th | dose independent | rect. | 15 | 21 |
| 964 | 149.79 | wind | 7.0 | 720 | < th | dose independent | no | NA | NA |
| 971 | 149.80 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 11 | 4 |
| 972 | 149.80 | wind | 7.0 | 720 | > th | dose independent | rect. | 10 | 5 |
| 974 | 149.80 | wind | 9.0 | 720 | < th | dose dependent | rect. | 6 | 4 |