Os03g0833800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os03g0833800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.13 | 0.333 | 9.19 | -1.41 | 0.483 | 1.18 | 0.716 | -3.49 | -0.107 | 22.6 | 25.37 | 1265 | -- | -- |
| 52.25 | 0.337 | 9.14 | -0.755 | 0.529 | 1.01 | 0.603 | -- | -0.0838 | 22.8 | 20.06 | 5528 | -- | -- |
| 52.2 | 0.336 | 9.19 | -1.39 | 0.483 | 1.17 | -- | -3.32 | -0.0932 | 22.6 | 25.51 | 1265 | -- | -- |
| 52.96 | 0.339 | 9.12 | -0.72 | 0.568 | 0.918 | -- | -- | -0.0358 | 23.3 | 22.25 | 6282 | -- | -- |
| 60.6 | 0.363 | 9.15 | -1.1 | -- | 1.35 | -- | -2.13 | -0.12 | -- | 23.55 | 980 | -- | -- |
| 79.62 | 0.418 | 9.07 | -0.25 | 0.604 | -- | 0.687 | -- | 0.193 | 23.2 | -- | -- | -- | -- |
| 81.64 | 0.423 | 9.07 | -0.279 | 0.601 | -- | -- | -- | 0.19 | 23.2 | -- | -- | -- | -- |
| 62.35 | 0.368 | 9.08 | -0.58 | -- | 1.19 | -- | -- | 0.0834 | -- | 24.9 | 964 | -- | -- |
| 62.4 | 0.368 | 9.08 | -- | 0.551 | 0.652 | -- | -- | 0.109 | 22.9 | 26.4 | 6928 | -- | -- |
| 104.2 | 0.477 | 9.05 | -0.264 | -- | -- | -- | -- | 0.196 | -- | -- | -- | -- | -- |
| 83.68 | 0.428 | 9.06 | -- | 0.598 | -- | -- | -- | 0.221 | 23.2 | -- | -- | -- | -- |
| 70.47 | 0.391 | 9.06 | -- | -- | 1.06 | -- | -- | 0.17 | -- | 25.14 | 953 | -- | -- |
| 106.03 | 0.481 | 9.05 | -- | -- | -- | -- | -- | 0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 7 | 48.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 42 | 49.86 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 63 | 50.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 250 | 50.83 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 282 | 51.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 8 |
| 286 | 51.33 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 11 |
| 307 | 51.43 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 10 |
| 323 | 51.50 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 8 |
| 454 | 51.91 | temperature | 25 | 4320 | > th | dose independent | sin | 3 | NA |
| 469 | 51.93 | temperature | 25 | 4320 | < th | dose independent | sin | 3 | NA |
| 548 | 52.09 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 549 | 52.09 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 556 | 52.10 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 657 | 52.30 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 6 |
| 669 | 52.32 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 689 | 52.36 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 722 | 52.45 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 728 | 52.47 | wind | 7 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 733 | 52.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 742 | 52.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 759 | 52.55 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 797 | 52.66 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 817 | 52.71 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 824 | 52.72 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 850 | 52.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 875 | 52.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 876 | 52.83 | wind | 9 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 890 | 52.86 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 891 | 52.86 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 900 | 52.87 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 901 | 52.87 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 912 | 52.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 22 |
| 928 | 52.93 | wind | 7 | 43200 | > th | dose dependent | sin | 23 | NA |
| 936 | 52.93 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 20 |
| 990 | 53.01 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 12 |