BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0133200 Os09g0133200|AK073545
(253 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0133200 Similar to Dehydrogenase/reductase SDR family ... 439 e-123
Os03g0268900 Similar to Short chain alcohol dehydrogenase-like 94 8e-20
Os11g0654400 Similar to Short chain alcohol dehydrogenase-like 81 8e-16
Os11g0652900 Similar to Short chain alcohol dehydrogenase-like 77 9e-15
AK119939 77 1e-14
Os04g0614000 Similar to Peroxisomal 2,4-dienoyl-CoA reducta... 73 2e-13
Os11g0438700 Similar to Tropinone reductase-I (EC 1.1.1.206... 73 2e-13
Os12g0242700 Similar to 3-oxoacyl-[acyl-carrier-protein] re... 70 1e-12
Os11g0443700 Similar to Short chain alcohol dehydrogenase-like 69 2e-12
Os07g0663700 Glucose/ribitol dehydrogenase family protein 65 5e-11
>Os09g0133200 Similar to Dehydrogenase/reductase SDR family member 4 (EC
1.1.1.184) (NADPH- dependent carbonyl
reductase/NADP-retinol dehydrogenase) (CR) (PHCR)
(Peroxisomal short-chain alcohol dehydrogenase)
(NADPH-dependent retinol dehydrogenase/reductase) (NDRD)
(SCAD-SRL) (humNRDR) (PSCD). Splice isoform 2
Length = 253
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/253 (88%), Positives = 225/253 (88%)
Query: 1 MEVKCRRLEGKVAVVTASTQGIGLAIAERLGLEGAAVVISSRKKKNVDEAVVGLRAKGIT 60
MEVKCRRLEGKVAVVTASTQGIGLAIAERLGLEGAAVVISSRKKKNVDEAVVGLRAKGIT
Sbjct: 1 MEVKCRRLEGKVAVVTASTQGIGLAIAERLGLEGAAVVISSRKKKNVDEAVVGLRAKGIT 60
Query: 61 VVGVVCHVSIPEQRKNLIDTAVKNFGHIDIVVSNAAANPSVDNILEMKEPILDKLWDINV 120
VVGVVCHVSIPEQRKNLIDTAVKNFGHIDIVVSNAAANPSVDNILEMKEPILDKLWDINV
Sbjct: 61 VVGVVCHVSIPEQRKNLIDTAVKNFGHIDIVVSNAAANPSVDNILEMKEPILDKLWDINV 120
Query: 121 KASILLLQDAAAYLRKGSSVILISSITGYNPEPALSMYAVXXXXXXXXXXXXXXEMGPNT 180
KASILLLQDAAAYLRKGSSVILISSITGYNPEPALSMYAV EMGPNT
Sbjct: 121 KASILLLQDAAAYLRKGSSVILISSITGYNPEPALSMYAVTKTALLGLTKALAAEMGPNT 180
Query: 181 RVNCIAPGFVPTNFARFLTTNDTIKNELIDRSTLKRLGTVEDMXXXXXXXXXXXXXXITA 240
RVNCIAPGFVPTNFARFLTTNDTIKNELIDRSTLKRLGTVEDM ITA
Sbjct: 181 RVNCIAPGFVPTNFARFLTTNDTIKNELIDRSTLKRLGTVEDMAAAAAFLASDDASFITA 240
Query: 241 ETIVVAGGTRSRL 253
ETIVVAGGTRSRL
Sbjct: 241 ETIVVAGGTRSRL 253
>Os03g0268900 Similar to Short chain alcohol dehydrogenase-like
Length = 270
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 117/248 (47%), Gaps = 11/248 (4%)
Query: 8 LEGKVAVVTASTQGIGLAIAERLGLEGAAVVISSRKKKNVDEAVVGLRAKGITVVGVVCH 67
L GK+A+VT T+GIG A+ E L GAAV SR + + E + A+G V VC
Sbjct: 18 LHGKMALVTGGTRGIGRAVVEELAALGAAVHTCSRNEAELGERLKEWEARGFRVTISVCD 77
Query: 68 VSIPEQRKNLI-DTAVKNFGHIDIVVSNAAAN---PSVDNILEMKEPILDKLWDINVKAS 123
+S +QR+ LI D A + G +DI+V+N N P+ E L N++++
Sbjct: 78 LSARDQRERLIGDVADRFGGKLDILVNNVGTNIRKPTT----EYSADEYSFLMATNLESA 133
Query: 124 ILLLQDAAAYLR-KGS-SVILISSITGYNPEPALSMYAVXXXXXXXXXXXXXXEMGP-NT 180
L Q L+ GS S++ ISS+ G + ++YA+ E N
Sbjct: 134 YHLCQLGHPLLKASGSGSIVFISSVAGIVALFSGTIYAMTKGAMNQLTKNLACEWAKDNI 193
Query: 181 RVNCIAPGFVPTNFARFLTTNDTIKNELIDRSTLKRLGTVEDMXXXXXXXXXXXXXXITA 240
R NC+APG++ T+ + + N + + R+ L+R+G ++ IT
Sbjct: 194 RTNCVAPGYILTSLSEGILANKEFEGSVKSRTPLRRVGEPAEISSLVAFLCMPGSTYITG 253
Query: 241 ETIVVAGG 248
+TI V GG
Sbjct: 254 QTIAVDGG 261
>Os11g0654400 Similar to Short chain alcohol dehydrogenase-like
Length = 268
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 115/254 (45%), Gaps = 17/254 (6%)
Query: 8 LEGKVAVVTASTQGIGLAIAERLGLEGAAVVISSRKKKNVDEAVVGLRAKGITVVGVVCH 67
L G A+VT ++GIG AI E L GA V +R ++ + +G+ V VC
Sbjct: 15 LAGATALVTGGSKGIGHAIVEELAGFGARVHTCARNAAELEASRRRWEERGLRVTATVCD 74
Query: 68 VSIPEQRKNLIDTAVKNF-GHIDIVVSN-------AAANPSVDNILEMKEPILDKLWDIN 119
VS R+ L+ A F G +DI+V+N AAA S ++ + L+ + ++
Sbjct: 75 VSARGDRERLVAAAAAEFGGRLDILVNNVGRTMFRAAAACSGEDFAVLVATNLESCFHLS 134
Query: 120 VKASILLLQDAAAYLRKGSSVILISSITGYNPEPALSMYAVXXXXXXXXXXXXXXEM-GP 178
A LLL A G V+ ISS+ G PAL++Y++ E G
Sbjct: 135 QLAHPLLLAAGGARGGGGGCVVNISSVAGSVGMPALAVYSMTKGGMNQLTRSLAAEWAGD 194
Query: 179 NTRVNCIAPGFVPTNFARFLTTNDTIKNELI----DRSTLKRLGTVEDMXXXXXXXXXXX 234
RVNC+APG V T+ + ++TI ELI DR ++RL E++
Sbjct: 195 GIRVNCVAPGGVKTD----ICQDETIDPELIKSEMDRLPMRRLAEPEEVAATVAFLCMPA 250
Query: 235 XXXITAETIVVAGG 248
IT + + V GG
Sbjct: 251 ASYITGQVVGVDGG 264
>Os11g0652900 Similar to Short chain alcohol dehydrogenase-like
Length = 264
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 112/254 (44%), Gaps = 21/254 (8%)
Query: 8 LEGKVAVVTASTQGIGLAIAERLGLEGAAVVISSRKKKNVDEAVVGLRAKGITVVGVVCH 67
L G A+VT ++GIG AI E L GA V +R ++ + +G+ V VC
Sbjct: 15 LAGATALVTGGSKGIGHAIVEELAGFGARVHTCARNAAELEASRRRWEERGLRVTATVCD 74
Query: 68 VSIPEQRKNLIDTAVKNF-GHIDIVVSN-------AAANPSVDNILEMKEPILDKLWDIN 119
VS R+ L+ A F G +DI+V+N AAA S ++ + L+ + +
Sbjct: 75 VSARGDRERLVAAAAGEFGGRLDILVNNVGRTMFRAAAACSGEDFALLVATNLESCFHL- 133
Query: 120 VKASILLLQDAAAYLRKGSSVILISSITGYNPEPALSMYAVXXXXXXXXXXXXXXEM-GP 178
S L A G V+ ISS+ G PAL++Y++ E G
Sbjct: 134 ---SQLAHPLLLAAGGGGGCVVNISSVAGTVGIPALAVYSMTKGGMNQLTRSLAAEWAGD 190
Query: 179 NTRVNCIAPGFVPTNFARFLTTNDTIKNELI----DRSTLKRLGTVEDMXXXXXXXXXXX 234
RVNC+APG V T+ + ++TI ELI DR ++RL E++
Sbjct: 191 GIRVNCVAPGGVKTD----ICQDETIDPELIKSEMDRLPMRRLAEPEEVAATVAFLCMPA 246
Query: 235 XXXITAETIVVAGG 248
IT + + V GG
Sbjct: 247 ASYITGQVVGVDGG 260
>AK119939
Length = 310
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 112/258 (43%), Gaps = 17/258 (6%)
Query: 8 LEGKVAVVTASTQGIGLAIAERLGLEGAAVVISSRKKKNVDEAVVGL---RAKGITVVGV 64
L GKVA++T + +GIG A LG GA+VV++ K + VV L G + +
Sbjct: 52 LHGKVALITGAGRGIGRGCAIELGRRGASVVVNYANSKESADEVVKLIEETGTGAKAISI 111
Query: 65 VCHVSIPEQRKNLIDTAVKNFGHIDIVVSNAAANPSVDNILEMKEPILDKLWDINVKASI 124
VS P + + L + +FG IDIV+SN+ S D E+ E D ++++N +A
Sbjct: 112 QADVSKPSEIERLFQESKAHFGKIDIVMSNSGTE-SWDKTEEITEEKYDHVFNLNARAQF 170
Query: 125 LLLQDAAAYLRKGSSVILISSI-TGYNPEPALSMYAVXXXXXXXXXXXXXXEMG-PNTRV 182
+ Q A +L +IL+SSI G ++Y + G V
Sbjct: 171 FVGQAAWKHLEDNGRLILMSSIAAGLLGVRDHALYNASKMAVIGMIKAFATDFGRRGITV 230
Query: 183 NCIAPGFVPT-----NFARFLT--TND----TIKNELIDRSTLKRLGTVEDMXXXXXXXX 231
N +APG + + N ++ T D TI+ + D L R T ED+
Sbjct: 231 NGVAPGGIKSDMFTQNAWHYIPGGTPDIPAATIEKMMADHCPLGRCATPEDVARVVGFLS 290
Query: 232 XXXXXXITAETIVVAGGT 249
+ + I ++GG+
Sbjct: 291 SEDGGWVNGQVITISGGS 308
>Os04g0614000 Similar to Peroxisomal 2,4-dienoyl-CoA reductase (EC 1.3.1.34)
Length = 299
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 106/257 (41%), Gaps = 22/257 (8%)
Query: 8 LEGKVAVVTASTQGIGLAIAERLGLEGAAVVISSRKKKNVDEAVVGLRAKGITVVGVVCH 67
L GK A+VT GIG IA +L GA V I R+++ +D+AV LR+ G+ VG
Sbjct: 12 LRGKAALVTGGGSGIGFEIAAQLARHGAHVAIMGRRREVLDKAVAALRSHGLRAVGFEGD 71
Query: 68 VSIPEQRKNLIDTAVKNFGHIDIVVSNAAANPSVDNILEMKEPILDKLW----DINVKAS 123
V E ++ V++FG +DI+V+ AA N L E + K + DI+ +
Sbjct: 72 VRKQEDAARVVAATVQHFGKLDILVNGAAG-----NFLASPEDLTPKGFRTVVDIDTVGT 126
Query: 124 ILLLQDAAAYLRKGSS---------VILISSITGYNPEPALSMYAVXXXXXXXXXXXXXX 174
+ +A YL+KG +I IS+ Y +
Sbjct: 127 YTMCYEALKYLKKGGPGKGPSTGGVIINISATLHYTAAWYQIHVSAAKAGVDSITRSLAL 186
Query: 175 EMGPNT--RVNCIAPGFVP-TNFARFLTTNDTIKNELIDRSTLKRLGTVEDMXXXXXXXX 231
E G + RVN IAPG + T R L + K + L +LG D+
Sbjct: 187 EWGTDYDIRVNGIAPGPIEGTPGMRKLAPEEMAKGSR-EIMPLFKLGEKWDIAMAALYLA 245
Query: 232 XXXXXXITAETIVVAGG 248
+ T+VV GG
Sbjct: 246 SDAGKYVNGTTVVVDGG 262
>Os11g0438700 Similar to Tropinone reductase-I (EC 1.1.1.206) (TR-I) (Tropine
dehydrogenase)
Length = 264
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 106/247 (42%), Gaps = 7/247 (2%)
Query: 8 LEGKVAVVTASTQGIGLAIAERLGLEGAAVVISSRKKKNVDEAVVGLRAKGITVVGVVCH 67
L G A+VT ++GIG AI E L GA V +R + ++ L AKG+ V VC
Sbjct: 15 LAGATALVTGGSKGIGRAIVEELASLGATVHTCARTEAPLNRCREELTAKGLAVTVSVCD 74
Query: 68 VSIPEQRKNLIDTAVKNFGHIDIVVSNAAANPSVDNILEMKEPILDKLWDINVKASILLL 127
VS+ R+ L T + FG ++ N A + +E+ ++ +N ++ L
Sbjct: 75 VSLRADREALAGTVRELFGGKLSILVNCAGMSFLKPAVELTPDDCSQVMGMNFESCFHLS 134
Query: 128 QDAAAYLRKGS--SVILISSITGYNPEPAL--SMYAVXXXXXXXXXXXXXXEMGPN-TRV 182
Q A L+ +I ISSI +L ++Y+ E + RV
Sbjct: 135 QLAYPLLKASQRGCIINISSIASVVAFCSLPNAVYSAAKGAMNQVTRNLAAEWANDGIRV 194
Query: 183 NCIAPGFVPTN-FARFLTTNDTIKNELIDRSTLKRLGTVEDMXXXXXXXXXXXXXXITAE 241
NC+APGF+ T + F+ N+ + E R + RLG ED+ IT +
Sbjct: 195 NCVAPGFIRTPLLSEFVEGNELGRAEF-SRVPMGRLGEPEDIASLVAFLSMPASSYITGQ 253
Query: 242 TIVVAGG 248
I GG
Sbjct: 254 VICADGG 260
>Os12g0242700 Similar to 3-oxoacyl-[acyl-carrier-protein] reductase 1,
chloroplast precursor (EC 1.1.1.100) (3-ketoacyl-acyl
carrier protein reductase 1) (Beta- keto acyl-carrier
protein reductase 1)
Length = 304
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 7/221 (3%)
Query: 7 RLEGKVAVVTASTQGIGLAIAERLGLEGAAVVISSRKKK-NVDEAVVGLRAKGITVVGVV 65
+L VAVVT +++GIG AIA LG G V+++ K +E + G T +
Sbjct: 58 KLAAPVAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAEEVCREIEESGGTAITFS 117
Query: 66 CHVSIPEQRKNLIDTAVKNFGHIDIVVSNAAANPSVDNILEMKEPILDKLWDINVKASIL 125
VSI + ++++ A+ +G +D++V+NA ++ MK ++ D+N+ L
Sbjct: 118 ADVSIEAEVESMMRAAIDTWGTLDVLVNNAGITRDAL-LMRMKRTQWQEVVDVNLTGVYL 176
Query: 126 LLQDAAA--YLRKGSSVILISSITGYNPEPALSMYAVXXXXXXXXXXXXXXEMGP-NTRV 182
Q AA ++K +I I+S++G + Y E G N V
Sbjct: 177 CAQAAAGVMMMKKKGRIINITSVSGIIGNIGQANYCAAKAGVIGLTKAMAREYGSRNINV 236
Query: 183 NCIAPGFVPTNFARFLTTNDTIKNELIDRSTLKRLGTVEDM 223
N +APG+V +N L D ++ + ++ L R G E++
Sbjct: 237 NAVAPGWVTSNMTAKL--GDNVEQKALETIPLGRFGKPEEI 275
>Os11g0443700 Similar to Short chain alcohol dehydrogenase-like
Length = 260
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 103/249 (41%), Gaps = 13/249 (5%)
Query: 8 LEGKVAVVTASTQGIGLAIAERLGLEGAAVVISSRKKKNVDEAVVGLRAKGITVVGVVCH 67
L G A+VT ++GIG AI E L GA V +R + + AKG+ V VC
Sbjct: 13 LAGATALVTGGSKGIGRAIVEELASFGATVHTCARNQAELSRCQEEWTAKGLAVTVSVCD 72
Query: 68 VSIPEQRKNLIDTAVKNF-GHIDIVVSNAAA---NPSVDNILEMKEPILDKLWDINVKAS 123
V++ R+ L F G + I+V+NA P+ D E +L N ++
Sbjct: 73 VAVRADREALAGRVSAMFDGKLSILVNNAGTAYLKPAADLTPEET----SRLMTTNFESC 128
Query: 124 ILLLQDAAAYLRKG--SSVILISSITGYNPEPALSMYAVXXXXXXXXXXXXXXEMGPN-T 180
L Q L+ S++ ISS+ +L +Y+ E +
Sbjct: 129 FHLSQLFYPLLKDSGRGSIVNISSVASVLAFHSLPIYSAAKGAMNQVTRNLACEWASDGI 188
Query: 181 RVNCIAPGFVPTN-FARFLTTNDTIKNELIDRSTLKRLGTVEDMXXXXXXXXXXXXXXIT 239
RVN +APG++ T F+ ND + E +R L RLG ED+ IT
Sbjct: 189 RVNSVAPGYIQTPLLTAFVAGNDFAQVEF-NRLPLGRLGKPEDISSLVAFLCMPAASYIT 247
Query: 240 AETIVVAGG 248
+ I V GG
Sbjct: 248 GQIICVDGG 256
>Os07g0663700 Glucose/ribitol dehydrogenase family protein
Length = 300
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 10/189 (5%)
Query: 5 CRRLEGKVAVVTASTQGIGLAIAERLGLEGAAVVISSRKKKNVDEAVVGLRAKGITVVGV 64
+RL GKVAV+T GIG A A+ GA V+++ + L G
Sbjct: 36 AQRLAGKVAVITGGASGIGKATAKEFIENGAKVIMADVQDDLGHSTAAEL---GPDASYT 92
Query: 65 VCHVSIPEQRKNLIDTAVKNFGHIDIVVSNA---AANPSVDNILEMKEPILDKLWDINVK 121
C V+ Q +D AVK GH+DI+ +NA A P D++ + D++ IN +
Sbjct: 93 RCDVTDEAQVAAAVDLAVKRHGHLDILYNNAGVMGAMPQ-DDMASVDLANFDRMMAINAR 151
Query: 122 ASILLLQDAAAYL--RKGSSVILISSITGYNPEPALSMYAVXXXXXXXXXXXXXXEMGPN 179
A+++ ++ AA + R+ ++ +S TG P P +++YAV + +
Sbjct: 152 AALVGIKHAARVMSPRRSGVILCTASDTGVMPMPNIALYAVSKATTIAIVRAAAEPLSRH 211
Query: 180 T-RVNCIAP 187
RVN I+P
Sbjct: 212 GLRVNAISP 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,775,042
Number of extensions: 230986
Number of successful extensions: 692
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 716
Number of HSP's successfully gapped: 17
Length of query: 253
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 154
Effective length of database: 11,866,615
Effective search space: 1827458710
Effective search space used: 1827458710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)