Os04g0614000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxisomal 2,4-dienoyl-CoA reductase (EC 1.3.1.34).
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Os04g0614000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxisomal 2,4-dienoyl-CoA reductase (EC 1.3.1.34).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.35 | 0.196 | 12.4 | 0.876 | 0.224 | -0.482 | 0.0219 | -0.306 | 0.316 | 6.38 | 17 | 259 | -- | -- |
| 17.41 | 0.194 | 12.4 | 0.913 | 0.226 | -0.456 | 0.11 | -- | 0.325 | 6.52 | 18.3 | 249 | -- | -- |
| 17.35 | 0.194 | 12.4 | 0.874 | 0.222 | -0.481 | -- | -0.316 | 0.315 | 6.35 | 17.14 | 263 | -- | -- |
| 17.41 | 0.194 | 12.4 | 0.925 | 0.221 | -0.465 | -- | -- | 0.33 | 6.38 | 18.33 | 259 | -- | -- |
| 19.21 | 0.204 | 12.4 | 0.928 | -- | -0.626 | -- | -0.185 | 0.361 | -- | 18.34 | 319 | -- | -- |
| 20.6 | 0.213 | 12.4 | 0.813 | 0.376 | -- | 0.181 | -- | 0.253 | 5.67 | -- | -- | -- | -- |
| 20.68 | 0.213 | 12.4 | 0.814 | 0.377 | -- | -- | -- | 0.252 | 5.64 | -- | -- | -- | -- |
| 19.24 | 0.204 | 12.4 | 0.967 | -- | -0.622 | -- | -- | 0.363 | -- | 18.7 | 318 | -- | -- |
| 37.82 | 0.286 | 12.5 | -- | 0.351 | -0.121 | -- | -- | 0.188 | 5.62 | 21.17 | 327 | -- | -- |
| 28.06 | 0.248 | 12.4 | 0.826 | -- | -- | -- | -- | 0.261 | -- | -- | -- | -- | -- |
| 38.14 | 0.289 | 12.5 | -- | 0.39 | -- | -- | -- | 0.161 | 5.54 | -- | -- | -- | -- |
| 40.6 | 0.297 | 12.5 | -- | -- | -0.446 | -- | -- | 0.181 | -- | 25.6 | 267 | -- | -- |
| 46.06 | 0.317 | 12.5 | -- | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.83 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 10 |
| 8 | 16.14 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 11 | 16.19 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 14 | 16.24 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 38 | 16.43 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 59 | 16.53 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 66 | 16.57 | temperature | 10.0 | 270 | > th | dose dependent | sin | 1 | NA |
| 90 | 16.65 | temperature | 30.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 185 | 16.89 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 10 |
| 216 | 16.96 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 10 |
| 217 | 16.96 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 10 | 10 |
| 257 | 17.03 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 17 | 13 |
| 263 | 17.04 | humidity | 70.0 | 90 | > th | dose independent | rect. | 6 | 17 |
| 281 | 17.06 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 293 | 17.07 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 22 |
| 315 | 17.10 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 321 | 17.11 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 327 | 17.12 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 337 | 17.13 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 6 | 17 |
| 344 | 17.15 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 4 |
| 386 | 17.21 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 399 | 17.22 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 434 | 17.24 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 472 | 17.28 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 491 | 17.30 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 550 | 17.33 | humidity | 70.0 | 270 | > th | dose independent | rect. | 10 | 22 |
| 578 | 17.35 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 6 | 17 |
| 593 | 17.36 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 15 |
| 616 | 17.38 | temperature | 15.0 | 270 | > th | dose dependent | no | NA | NA |
| 629 | 17.39 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 643 | 17.40 | temperature | 30.0 | 90 | < th | dose independent | rect. | 6 | 17 |
| 645 | 17.40 | radiation | 10.0 | 270 | > th | dose independent | rect. | 8 | 23 |
| 655 | 17.41 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 661 | 17.41 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 8 | 10 |
| 725 | 17.44 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 743 | 17.45 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 759 | 17.46 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 788 | 17.47 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 13 |
| 795 | 17.48 | humidity | 70.0 | 270 | > th | dose independent | rect. | 3 | 20 |
| 797 | 17.48 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 11 |
| 807 | 17.49 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 808 | 17.49 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 810 | 17.49 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 830 | 17.50 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 832 | 17.50 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 844 | 17.50 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 882 | 17.51 | temperature | 25.0 | 270 | < th | dose independent | rect. | 5 | 13 |
| 900 | 17.52 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 925 | 17.53 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 932 | 17.53 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 944 | 17.53 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 954 | 17.54 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 956 | 17.54 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 960 | 17.54 | humidity | 70.0 | 270 | > th | dose independent | rect. | 3 | 22 |
| 961 | 17.54 | radiation | 10.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 980 | 17.55 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 988 | 17.55 | radiation | 10.0 | 270 | > th | dose independent | rect. | 13 | 23 |