Os07g0663700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glucose/ribitol dehydrogenase family protein.
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Os07g0663700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glucose/ribitol dehydrogenase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.01 | 0.54 | 12.3 | 0.474 | 0.908 | -3.51 | 0.717 | -4.61 | 0.713 | 3.1 | 0.6011 | 1453 | -- | -- |
| 137.93 | 0.547 | 12.4 | 0.218 | 0.932 | -2.45 | 0.604 | -- | 0.641 | 3.1 | 1.571 | 1458 | -- | -- |
| 132.95 | 0.537 | 12.2 | 0.54 | 0.887 | -4 | -- | -6.35 | 0.778 | 3.12 | 0.3038 | 1450 | -- | -- |
| 138.55 | 0.548 | 12.4 | 0.0613 | 0.925 | -2.54 | -- | -- | 0.659 | 2.87 | 1.373 | 1458 | -- | -- |
| 165.85 | 0.6 | 12.3 | 0.611 | -- | -3.96 | -- | -6.38 | 0.775 | -- | 0.3083 | 1416 | -- | -- |
| 204.01 | 0.67 | 12.3 | 0.65 | 0.868 | -- | 1.04 | -- | 0.961 | 3.57 | -- | -- | -- | -- |
| 207.23 | 0.674 | 12.3 | 0.633 | 0.87 | -- | -- | -- | 0.955 | 3.39 | -- | -- | -- | -- |
| 172.28 | 0.611 | 12.4 | 0.115 | -- | -2.43 | -- | -- | 0.671 | -- | 1.57 | 1399 | -- | -- |
| 138.61 | 0.548 | 12.4 | -- | 0.936 | -2.56 | -- | -- | 0.644 | 2.93 | 1.247 | 1457 | -- | -- |
| 249.84 | 0.739 | 12.3 | 0.67 | -- | -- | -- | -- | 0.978 | -- | -- | -- | -- | -- |
| 217.79 | 0.69 | 12.3 | -- | 0.883 | -- | -- | -- | 0.885 | 3.39 | -- | -- | -- | -- |
| 172.54 | 0.612 | 12.4 | -- | -- | -2.5 | -- | -- | 0.641 | -- | 1.5 | 1398 | -- | -- |
| 261.66 | 0.755 | 12.3 | -- | -- | -- | -- | -- | 0.904 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 6 | 129.60 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 7 | 129.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 17 | 131.01 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 31 | 132.59 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 34 | 132.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 39 | 132.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 55 | 133.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 60 | 134.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 88 | 134.27 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 90 | 134.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 124 | 134.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 136 | 134.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 195 | 135.74 | radiation | 1 | 1440 | > th | dose independent | sin | 23 | NA |
| 205 | 136.45 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 270 | 137.10 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 272 | 137.12 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 275 | 137.16 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 292 | 137.31 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 374 | 138.19 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 375 | 138.20 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 378 | 138.23 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 382 | 138.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 383 | 138.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 386 | 138.28 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 388 | 138.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 394 | 138.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 416 | 138.40 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 420 | 138.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 563 | 140.12 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 564 | 140.12 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 565 | 140.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 627 | 140.85 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 647 | 141.54 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 6 |
| 663 | 141.75 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 6 |
| 667 | 141.85 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 691 | 142.40 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 709 | 142.61 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 7 |
| 729 | 142.70 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 777 | 143.53 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 792 | 143.77 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 797 | 143.87 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 829 | 144.38 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 834 | 144.40 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 851 | 144.74 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 881 | 145.02 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 934 | 145.29 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 9 |