BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0541400 Os08g0541400|AK068255
(261 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0541400 Peptidylprolyl isomerase, FKBP-type domain con... 306 1e-83
Os08g0525600 Similar to Peptidylprolyl isomerase 77 2e-14
Os02g0751600 Peptidylprolyl isomerase, FKBP-type domain con... 76 2e-14
Os04g0352400 Peptidylprolyl isomerase, FKBP-type domain con... 73 2e-13
Os06g0663800 Similar to FKBP-type peptidyl-prolyl cis-trans... 72 4e-13
Os07g0490400 Peptidylprolyl isomerase, FKBP-type domain con... 72 6e-13
Os01g0915800 Similar to FK506-binding protein 2-2 precursor... 69 4e-12
Os09g0501850 Similar to FK506-binding protein 2-1 precursor... 69 5e-12
Os02g0491400 Similar to Peptidylprolyl isomerase 68 6e-12
>Os08g0541400 Peptidylprolyl isomerase, FKBP-type domain containing protein
Length = 261
Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 164/233 (70%), Positives = 164/233 (70%)
Query: 29 KPWLPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQRGVDDGGVVCTSATXX 88
KPWLPD QQRGVDDGGVVCTSAT
Sbjct: 29 KPWLPDGRAFRGSRALSSAARRCFCCCCRCEAAGEAGTAPPPQQRGVDDGGVVCTSATRS 88
Query: 89 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPEEKPKLCDAACEKDLENVPMVTTESGL 148
PPEEKPKLCDAACEKDLENVPMVTTESGL
Sbjct: 89 RRRSVLGVAVGVSSALALGLAAFDDALAAGLPPEEKPKLCDAACEKDLENVPMVTTESGL 148
Query: 149 QYKDIKVGEGPSPPIGFQVAANYVAMVPNGQIFDSSLEKGQPYIFRVGSGQVIKGLDEGI 208
QYKDIKVGEGPSPPIGFQVAANYVAMVPNGQIFDSSLEKGQPYIFRVGSGQVIKGLDEGI
Sbjct: 149 QYKDIKVGEGPSPPIGFQVAANYVAMVPNGQIFDSSLEKGQPYIFRVGSGQVIKGLDEGI 208
Query: 209 LSMKVGGLRRLYIPGPLAFPKGLTSAPGRPRVAPSSPVMFDVNLLYIPGLDDE 261
LSMKVGGLRRLYIPGPLAFPKGLTSAPGRPRVAPSSPVMFDVNLLYIPGLDDE
Sbjct: 209 LSMKVGGLRRLYIPGPLAFPKGLTSAPGRPRVAPSSPVMFDVNLLYIPGLDDE 261
>Os08g0525600 Similar to Peptidylprolyl isomerase
Length = 580
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 145 ESGLQYKDIKVGEG-PSPPIGFQVAANYVAMVPNGQIFDSSLEKGQPYIFRVGSGQVIKG 203
+ GL+ K +K GEG +P +G +V +Y + +G+ FDSS ++G P+ F++G GQVIKG
Sbjct: 44 KQGLRKKLLKEGEGWETPEVGDEVEVHYTGTLLDGKKFDSSRDRGTPFKFKLGQGQVIKG 103
Query: 204 LDEGILSMKVGGLRRLYIPGPLAFPKGLTSAPGRPRVAPSSPVMFDVNLLYIPGLDD 260
D GI +MK G IP LA+ G + +P P + S+ + FDV LL + D
Sbjct: 104 WDLGIKTMKKGENAVFTIPPDLAY--GESGSP--PTIPASATLQFDVELLSWTSVKD 156
>Os02g0751600 Peptidylprolyl isomerase, FKBP-type domain containing protein
Length = 230
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 22/137 (16%)
Query: 126 KLCDAACEKDLENVPMVTTESGLQYKDIKVGEGPSPPIGFQVAANYVAMVPNGQIFDSSL 185
KLCD M +SGL Y D++VG G PP G + +Y A +G +FDS+
Sbjct: 103 KLCD-----------MNVVKSGLGYCDVEVGTGAQPPRGQLINVHYTARFTDGIVFDSTY 151
Query: 186 EKGQPYIFRVGSGQVIKGLDEGILS------MKVGGLRRLYIPGPLAF---PKGLTSAPG 236
++G+P R+G+G++++GL++GI M VGG R+L IP LA+ P G S G
Sbjct: 152 KRGRPLTMRLGAGKILRGLEQGISGGGGVPPMLVGGKRKLMIPATLAYGPEPAGCFS--G 209
Query: 237 RPRVAPSSPVMFDVNLL 253
+ ++ +++D+ L+
Sbjct: 210 DCNIPGNTTLLYDIFLV 226
>Os04g0352400 Peptidylprolyl isomerase, FKBP-type domain containing protein
Length = 585
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 5/115 (4%)
Query: 147 GLQYKDIKVGEG-PSPPIGFQVAANYVAMVPNGQIFDSSLEKGQPYIFRVGSGQVIKGLD 205
GL+ + +K GEG P G +V +Y + +G FDSS ++G P+ F +G G+VIKG D
Sbjct: 50 GLRKRLLKEGEGWDRPESGDEVQVHYTGTLLDGTKFDSSRDRGTPFKFSLGQGEVIKGWD 109
Query: 206 EGILSMKVGGLRRLYIPGPLAFPKGLTSAPGRPRVAPSSPVMFDVNLLYIPGLDD 260
EGI +MK G +P LA+ G +P P + P++ + FDV LL + D
Sbjct: 110 EGIKTMKKGEQAVFTVPPELAY--GEAGSP--PAIPPNATLRFDVELLSWASVKD 160
>Os06g0663800 Similar to FKBP-type peptidyl-prolyl cis-trans isomerase 3,
chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase)
(AtFKBP13) (FK506 binding protein 1)
Length = 218
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 126 KLCDAACEKDLENVPMVTTESGLQYKDIKVGEGPSPPIGFQVAANYVAMVPNGQIFDSSL 185
++ AA E P+ +GL + D VG G + G + A+Y + +G +FDSS
Sbjct: 76 RVLPAAAEASGGECPLEVAPNGLAFCDRVVGTGAAAEQGQLIKAHYTGRLEDGTVFDSSY 135
Query: 186 EKGQPYIFRVGSGQVIKGLDEGILS------MKVGGLRRLYIPGPLAF-PKGLTSAPGRP 238
++G+P FRVG G+VIKG D+GI+ M GG R L +P LA+ +G P
Sbjct: 136 KRGKPLTFRVGVGEVIKGWDQGIVGGEGIPPMLAGGKRSLRLPPELAYGARGAGCRGWEP 195
Query: 239 R---VAPSSPVMFDVNLL 253
+ P+S ++FDV +
Sbjct: 196 TSCVIPPNSTLLFDVEYV 213
>Os07g0490400 Peptidylprolyl isomerase, FKBP-type domain containing protein
Length = 258
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 5/114 (4%)
Query: 142 VTTESGLQYKDIKVGEGPSPPIGFQVAANYVAMVPNGQIFDSSLEKGQPYIFRVGSGQVI 201
+T +SGL Y+DIKVG G SP G QV +YV +G+ DS+ +G P R+G+ ++
Sbjct: 133 ITRDSGLLYEDIKVGTGNSPKDGQQVIFHYVGYNESGRRIDSTYIQGSPAKIRLGNKTLV 192
Query: 202 KGLDEGILSMKVGGLRRLYIPGPLAFPKGLTSAPGRPRVAPSSPVMFDVNLLYI 255
G +EGI MK GG RR+ IP L P G ++ + +FD+ LL +
Sbjct: 193 PGFEEGIRDMKPGGKRRIIIPPELGPPVGPSTF-----FSAKQFEVFDIELLAV 241
>Os01g0915800 Similar to FK506-binding protein 2-2 precursor (EC 5.2.1.8)
(Peptidyl-prolyl cis- trans isomerase) (PPIase)
(Rotamase) (15 kDa FKBP) (FKBP-15-2)
Length = 158
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Query: 164 GFQVAANYVAMVPNGQIFDSSLEKGQPYIFRVGSGQVIKGLDEGILSMKVGGLRRLYIPG 223
G ++ +Y + +G +FDSS ++G P+ F +G+GQVIKG D+G+L M VG R+L IP
Sbjct: 58 GDKIKVHYRGSLTDGSVFDSSYDRGDPFEFTLGNGQVIKGWDQGLLGMCVGEKRKLKIPA 117
Query: 224 PLAFPKGLTSAPGRPRVAPSSPVMFDVNLLYIPG 257
+ + G +P P++ + ++FD L+ + G
Sbjct: 118 KMGY--GERGSP--PKIPGGATLIFDTELIAVNG 147
>Os09g0501850 Similar to FK506-binding protein 2-1 precursor (EC 5.2.1.8)
(Peptidyl-prolyl cis- trans isomerase) (PPIase)
(Rotamase) (15 kDa FKBP) (FKBP-15-1)
Length = 154
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 164 GFQVAANYVAMVPNGQIFDSSLEKGQPYIFRVGSGQVIKGLDEGILSMKVGGLRRLYIPG 223
G +V +Y + +G FDSS E+G P F +G+GQVIKG D+GIL M VG R+L IP
Sbjct: 50 GDRVKVHYRGKLTDGTDFDSSYERGDPIEFELGTGQVIKGWDQGILGMCVGEKRKLKIPS 109
Query: 224 PLAFPKGLTSAPGRPRVAPSSPVMFDVNLLYIPG 257
L + G +P P + + ++FD L+ + G
Sbjct: 110 KLGY--GAQGSP--PTIPGGATLIFDTELVAVNG 139
>Os02g0491400 Similar to Peptidylprolyl isomerase
Length = 682
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 145 ESGLQYKDIKVGEG-PSPPIGFQVAANYVAMVPNGQIFDSSLEKGQPYIFRVGSGQVIKG 203
+ GL+ K +K GEG P G +V +Y + +G FDSS ++ P+ F +G GQVIKG
Sbjct: 93 KEGLRKKLVKEGEGWERPDAGDEVQVHYTGTLLDGTKFDSSRDRDAPFKFTLGQGQVIKG 152
Query: 204 LDEGILSMKVGGLRRLYIPGPLAFPKGLTSAPGRPRVAPSSPVMFDVNLLYIPGLDD 260
D GI +MK G IP LA+ G +P P + P++ + FDV L+ + D
Sbjct: 153 WDLGIKTMKKGENAIFTIPPELAY--GEDGSP--PVIPPNATLQFDVELISWESVKD 205
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.140 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,563,016
Number of extensions: 254903
Number of successful extensions: 451
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 10
Length of query: 261
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 162
Effective length of database: 11,866,615
Effective search space: 1922391630
Effective search space used: 1922391630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)