FiT-DB / Search/ Help/ Sample detail

Os08g0525600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peptidylprolyl isomerase; FK506-binding protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9 (0.0356) R2 : 0.794
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.32 (0.0927) R2dC : 0.328 R2C : 0.53
β3 : 2.84 (0.131) R2dE : 0.248 R2E : 0.459
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.286 (0.0755) R2dN8 : 0.00841 R2N8 : 0.0131
σ : 0.668
deviance : 205.89
__
_____
C
peak time of C : 13.8
E
wheather : temperature
threshold : 16.99
memory length : 67
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.25
open length of G : 6.21

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
193.9 0.654 9.01 -0.425 2.39 2.77 1.79 -1.37 0.223 13.7 17.26 74 5.08 6.29
195.12 0.651 9.01 -0.343 2.35 2.8 1.52 -- 0.253 13.7 17.1 70 5.18 6.22
203.75 0.665 9.01 -0.335 2.35 2.87 -- -0.144 0.261 13.8 17.21 72 5.13 6.32
203.31 0.664 9 -0.326 2.31 2.9 -- -- 0.242 13.8 17.36 65 5.26 6.23
263.63 0.756 8.99 -0.232 -- 3.75 -- 2.03 0.383 -- 3.752 353 3.59 10.1
304.39 0.818 8.92 -0.219 3.26 -- 1.81 -- 0.441 12.2 -- -- -- --
318.6 0.836 8.92 -0.148 3.25 -- -- -- 0.449 12.1 -- -- -- --
252.86 0.741 9.02 -0.279 -- 3.5 -- -- 0.28 -- -3.913 210 4.37 11.3
205.89 0.668 9 -- 2.32 2.84 -- -- 0.286 13.8 16.99 67 5.25 6.21
985.02 1.47 8.99 -0.253 -- -- -- -- 0.401 -- -- -- -- --
319.18 0.836 8.91 -- 3.26 -- -- -- 0.466 12.1 -- -- -- --
241.91 0.724 9.02 -- -- 3.56 -- -- 0.224 -- 1.964 116 5.08 11.6
986.71 1.47 8.98 -- -- -- -- -- 0.429 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 200.28 temperature 15.0 90 > th dose dependent rect. 5 6
4 210.95 temperature 10.0 10 > th dose dependent rect. 6 18
5 211.01 temperature 10.0 10 > th dose dependent rect. 6 20
7 212.47 temperature 20.0 90 > th dose independent rect. 5 6
9 212.75 temperature 30.0 10 < th dose dependent rect. 2 14
25 218.72 temperature 20.0 270 > th dose dependent rect. 5 3
33 219.85 temperature 20.0 10 > th dose dependent rect. 5 7
34 220.57 temperature 20.0 10 > th dose dependent rect. 6 5
40 221.56 wind 3.0 10 < th dose independent rect. 6 5
68 224.64 radiation 10.0 30 < th dose dependent sin 5 NA
75 225.13 temperature 20.0 270 > th dose dependent rect. 6 1
81 225.68 temperature 20.0 270 > th dose independent rect. 5 3
96 226.57 radiation 1.0 90 > th dose independent sin 5 NA
108 227.03 radiation 1.0 90 < th dose independent sin 5 NA
137 228.55 wind 5.0 30 < th dose dependent rect. 6 5
165 230.20 radiation 1.0 90 > th dose independent rect. 5 6
197 231.19 wind 5.0 90 < th dose dependent rect. 5 8
203 231.56 temperature 15.0 10 > th dose dependent rect. 6 12
208 231.77 radiation 10.0 30 < th dose dependent rect. 2 13
244 233.02 temperature 20.0 270 > th dose independent rect. 6 1
255 233.50 atmosphere 1010.0 90 < th dose independent rect. 5 6
257 233.69 temperature 30.0 10 < th dose dependent sin 3 NA
268 233.95 wind 5.0 90 < th dose dependent rect. 5 10
271 234.03 temperature 15.0 10 > th dose dependent sin 4 NA
285 234.40 temperature 20.0 90 > th dose independent rect. 5 12
330 235.95 radiation 1.0 90 < th dose independent rect. 1 15
334 236.16 radiation 1.0 90 < th dose independent rect. 1 13
340 236.28 radiation 20.0 10 < th dose dependent rect. 10 20
346 236.42 radiation 1.0 90 < th dose independent rect. 1 6
352 236.58 radiation 20.0 10 < th dose dependent rect. 13 17
360 236.72 radiation 20.0 10 < th dose dependent rect. 2 4
362 236.74 wind 9.0 90 < th dose dependent rect. 5 12
399 237.53 humidity 50.0 90 > th dose independent rect. 5 6
400 237.56 precipitation 0.1 90 < th dose independent rect. 5 6
401 237.56 precipitation 0.1 90 < th dose dependent rect. 5 6
420 237.78 temperature 25.0 10 > th dose dependent sin 7 NA
433 237.97 atmosphere 995.0 90 > th dose independent rect. 5 6
435 237.97 temperature 10.0 90 > th dose independent rect. 11 18
476 238.66 wind 9.0 90 < th dose independent rect. 11 18
482 238.74 precipitation 0.1 10 < th dose independent rect. 2 4
483 238.74 precipitation 0.1 10 < th dose dependent rect. 2 4
500 239.07 atmosphere 1015.0 1440 < th dose independent rect. 3 4
506 239.19 wind 5.0 10 < th dose independent rect. 2 4
510 239.25 temperature 15.0 90 > th dose independent rect. 5 21
527 239.50 atmosphere 995.0 90 > th dose independent rect. 11 18
534 239.60 atmosphere 1000.0 10 > th dose dependent rect. 2 4
542 239.76 temperature 10.0 1440 > th dose independent rect. 7 5
545 239.76 atmosphere 995.0 1440 > th dose independent rect. 7 5
546 239.76 temperature 10.0 1440 > th dose independent rect. 12 19
562 239.95 precipitation 0.1 10 < th dose independent rect. 11 19
564 239.95 precipitation 0.1 10 < th dose dependent rect. 11 19
606 240.41 temperature 25.0 30 < th dose independent rect. 2 14
612 240.49 wind 5.0 270 < th dose dependent rect. 6 1
619 240.58 wind 5.0 270 < th dose dependent rect. 5 3
627 240.64 temperature 10.0 10 > th dose independent rect. 2 4
629 240.64 temperature 30.0 10 < th dose independent rect. 2 4
630 240.64 humidity 50.0 10 > th dose independent rect. 2 4
633 240.64 atmosphere 995.0 10 > th dose independent rect. 2 4
634 240.64 atmosphere 1010.0 10 < th dose independent rect. 2 4
636 240.64 radiation 20.0 10 < th dose independent rect. 2 4
639 240.64 temperature 10.0 10 > th dose independent rect. 6 20
642 240.69 wind 9.0 10 < th dose independent rect. 6 20
666 241.04 atmosphere 1015.0 90 < th dose independent rect. 11 18
679 241.26 wind 3.0 270 < th dose independent rect. 6 1
699 241.51 atmosphere 1015.0 1440 < th dose independent rect. 1 6
709 241.61 precipitation 0.1 10 < th dose independent rect. 6 20
711 241.61 precipitation 0.1 10 < th dose dependent rect. 6 20
737 241.83 wind 9.0 90 < th dose dependent rect. 5 20
752 241.97 humidity 80.0 270 > th dose independent rect. 6 1
789 242.46 wind 9.0 1440 < th dose independent rect. 3 4
790 242.46 temperature 10.0 1440 > th dose independent rect. 3 4
793 242.46 temperature 30.0 1440 < th dose independent rect. 3 4
797 242.46 humidity 50.0 1440 > th dose independent rect. 3 4
802 242.46 atmosphere 995.0 1440 > th dose independent rect. 3 4
803 242.46 radiation 40.0 1440 < th dose independent rect. 3 4
807 242.46 temperature 10.0 1440 > th dose independent rect. 7 20
812 242.53 wind 9.0 90 < th dose dependent rect. 1 4
826 242.70 wind 3.0 270 < th dose independent rect. 5 3
827 242.70 humidity 90.0 90 < th dose independent rect. 6 5
828 242.70 radiation 1.0 270 > th dose dependent rect. 6 1
861 243.10 atmosphere 1015.0 90 < th dose dependent rect. 5 6
866 243.17 wind 9.0 10 < th dose dependent rect. 2 4
909 243.42 wind 1.0 10 > th dose independent rect. 6 5
932 243.60 wind 5.0 10 < th dose independent rect. 24 6
934 243.60 temperature 15.0 270 > th dose independent rect. 3 22
938 243.67 wind 1.0 90 > th dose independent rect. 11 18
949 243.79 wind 9.0 10 < th dose dependent rect. 24 6
983 243.95 radiation 1.0 270 > th dose independent rect. 5 3