Os04g0352400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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Os04g0352400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 719.65 | 1.26 | 5.5 | 0.864 | 2.29 | 8.52 | 4.12 | 0.00501 | -0.465 | 13.1 | 22.03 | 10 | 21.7 | -- |
| 709.07 | 1.24 | 5.51 | 0.871 | 2.64 | 8.22 | 4.06 | -- | -0.595 | 12.5 | 23.1 | 10 | 22.1 | -- |
| 756.15 | 1.28 | 5.41 | 1.5 | 2.31 | 8.37 | -- | 4.27 | -0.253 | 12.2 | 22.78 | 8 | 21.6 | -- |
| 765.5 | 1.29 | 5.47 | 1.13 | 2.69 | 8.33 | -- | -- | -0.442 | 11.9 | 23.34 | 9 | 22.2 | -- |
| 793.89 | 1.31 | 5.43 | 1.35 | -- | 10.3 | -- | 6.42 | -0.203 | -- | 19.03 | 5 | 19.9 | -- |
| 1597.08 | 1.87 | 5.15 | 2.01 | 6.1 | -- | 5.21 | -- | 0.64 | 11.5 | -- | -- | -- | -- |
| 1712.69 | 1.94 | 5.14 | 2.22 | 6.08 | -- | -- | -- | 0.657 | 11.4 | -- | -- | -- | -- |
| 850.55 | 1.36 | 5.51 | 0.757 | -- | 10.6 | -- | -- | -0.418 | -- | 19.77 | 5 | 20.1 | -- |
| 798.87 | 1.32 | 5.5 | -- | 2.54 | 8.62 | -- | -- | -0.572 | 12.1 | 23.15 | 10 | 22.1 | -- |
| 4030.23 | 2.97 | 5.28 | 2.06 | -- | -- | -- | -- | 0.596 | -- | -- | -- | -- | -- |
| 1842.3 | 2.01 | 5.19 | -- | 6.06 | -- | -- | -- | 0.41 | 11.4 | -- | -- | -- | -- |
| 865.02 | 1.37 | 5.54 | -- | -- | 10.8 | -- | -- | -0.496 | -- | 19.89 | 5 | 20.1 | -- |
| 4142.18 | 3 | 5.33 | -- | -- | -- | -- | -- | 0.367 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 751.93 | temperature | 20 | 10 | > th | dose dependent | sin | 3 | NA |
| 3 | 773.71 | temperature | 25 | 10 | > th | dose dependent | sin | 6 | NA |
| 16 | 799.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 15 |
| 21 | 804.25 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 33 | 825.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 35 | 827.41 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 51 | 842.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 57 | 846.71 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 89 | 873.11 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 8 |
| 103 | 885.66 | temperature | 25 | 30 | > th | dose independent | sin | 3 | NA |
| 142 | 911.95 | temperature | 25 | 30 | < th | dose independent | sin | 3 | NA |
| 145 | 913.53 | temperature | 25 | 90 | < th | dose independent | rect. | 2 | 15 |
| 178 | 924.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 197 | 931.80 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 6 |
| 228 | 941.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 385 | 983.25 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 11 |
| 392 | 984.70 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 396 | 984.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 399 | 985.75 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 480 | 1002.06 | temperature | 25 | 30 | > th | dose independent | rect. | 2 | 12 |
| 694 | 1034.99 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 731 | 1041.20 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 841 | 1061.27 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 927 | 1071.53 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 939 | 1072.13 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 983 | 1075.35 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |