Os06g0663800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to FKBP-type peptidyl-prolyl cis-trans isomerase 3, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) (AtFKBP13) (FK506 binding protein 1).
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Os06g0663800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to FKBP-type peptidyl-prolyl cis-trans isomerase 3, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) (AtFKBP13) (FK506 binding protein 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.71 | 0.303 | 13.6 | -0.818 | 1.01 | 0.502 | -0.298 | 0.0972 | -0.504 | 23.6 | 27 | 263 | -- | -- |
| 41.72 | 0.301 | 13.6 | -0.838 | 1.01 | 0.506 | -0.305 | -- | -0.509 | 23.6 | 26.97 | 257 | -- | -- |
| 42.08 | 0.302 | 13.6 | -0.794 | 1.01 | 0.494 | -- | 0.162 | -0.498 | 23.5 | 26.97 | 254 | -- | -- |
| 42.12 | 0.302 | 13.6 | -0.825 | 1.01 | 0.503 | -- | -- | -0.507 | 23.5 | 26.9 | 254 | -- | -- |
| 92.05 | 0.447 | 13.6 | -0.831 | -- | 0.707 | -- | 0.159 | -0.561 | -- | 25.59 | 2200 | -- | -- |
| 51.98 | 0.338 | 13.6 | -0.699 | 0.978 | -- | -0.232 | -- | -0.408 | 22.1 | -- | -- | -- | -- |
| 52.19 | 0.338 | 13.6 | -0.689 | 0.98 | -- | -- | -- | -0.408 | 22.1 | -- | -- | -- | -- |
| 91.53 | 0.446 | 13.6 | -0.912 | -- | 0.729 | -- | -- | -0.63 | -- | 25.6 | 2181 | -- | -- |
| 59.31 | 0.359 | 13.6 | -- | 0.983 | 0.388 | -- | -- | -0.405 | 23.2 | 26.99 | 270 | -- | -- |
| 110.17 | 0.49 | 13.6 | -0.677 | -- | -- | -- | -- | -0.406 | -- | -- | -- | -- | -- |
| 64.72 | 0.376 | 13.6 | -- | 0.977 | -- | -- | -- | -0.331 | 22 | -- | -- | -- | -- |
| 97.3 | 0.459 | 13.7 | -- | -- | 0.643 | -- | -- | -0.593 | -- | 25.4 | 722 | -- | -- |
| 122.25 | 0.516 | 13.6 | -- | -- | -- | -- | -- | -0.331 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.87 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 18 |
| 3 | 41.10 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 15 |
| 4 | 41.11 | temperature | 25 | 720 | > th | dose independent | rect. | 2 | 9 |
| 6 | 41.12 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 8 | 41.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 17 | 41.26 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 20 | 41.28 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 23 | 41.29 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 10 |
| 24 | 41.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 31 | 41.39 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 37 | 41.45 | temperature | 25 | 720 | > th | dose independent | rect. | 1 | 12 |
| 39 | 41.46 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 10 |
| 46 | 41.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 47 | 41.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 50 | 41.52 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 51 | 41.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 53 | 41.54 | temperature | 25 | 720 | < th | dose independent | sin | 4 | NA |
| 61 | 41.57 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 16 |
| 69 | 41.61 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 72 | 41.62 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 78 | 41.65 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 19 |
| 90 | 41.69 | temperature | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 96 | 41.71 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 126 | 41.81 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 160 | 41.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 212 | 42.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 338 | 42.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 351 | 42.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 356 | 42.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 384 | 42.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 572 | 42.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 7 |
| 642 | 42.95 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 22 |
| 689 | 43.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 909 | 43.30 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |