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Os07g0490400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0227) R2 : 0.806
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.22 (0.0566) R2dC : 0.662 R2C : 0.588
β3 : 1.01 (0.0535) R2dE : 0.154 R2E : 0.0364
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.593 (0.0478) R2dN8 : 0.0856 R2N8 : 0.0439
σ : 0.424
deviance : 82.98
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C
peak time of C : 20.9
E
wheather : temperature
threshold : 25.61
memory length : 195
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.69
open length of G : 8.09

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.62 0.427 11.5 0.0249 2.23 1 -0.334 0.387 -0.578 20.9 25.3 223 8.26 8.23
82.65 0.423 11.5 -0.0193 2.23 1.01 -0.358 -- -0.594 20.9 25.67 207 8.47 8.23
82.73 0.424 11.5 0.037 2.24 0.998 -- 0.388 -0.577 20.9 25.65 199 8.53 8.14
82.98 0.424 11.5 -0.0161 2.22 1.01 -- -- -0.595 20.9 25.6 195 8.67 8.12
113.08 0.495 11.5 0.419 -- 2.05 -- -0.871 -0.625 -- 6.135 830 9.33 6.97
113.82 0.5 11.5 0.162 2.32 -- -0.597 -- -0.461 19.7 -- -- -- --
114.83 0.502 11.5 0.177 2.32 -- -- -- -0.462 19.7 -- -- -- --
100.84 0.468 11.4 0.179 -- 2.35 -- -- -0.391 -- 6.634 902 8.42 7.53
82.98 0.424 11.5 -- 2.22 1.01 -- -- -0.593 20.9 25.61 195 8.69 8.09
405.24 0.941 11.5 0.146 -- -- -- -- -0.496 -- -- -- -- --
115.66 0.503 11.5 -- 2.32 -- -- -- -0.481 19.7 -- -- -- --
101.3 0.469 11.4 -- -- 2.37 -- -- -0.425 -- 6.474 892 8.4 7.78
405.8 0.94 11.5 -- -- -- -- -- -0.512 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.21 temperature 25.0 270 > th dose independent rect. 8 8
8 86.91 temperature 20.0 270 > th dose dependent rect. 8 7
11 87.25 temperature 20.0 90 > th dose independent rect. 5 4
12 87.50 temperature 20.0 10 > th dose dependent rect. 6 3
16 87.92 temperature 25.0 10 > th dose independent rect. 6 3
24 88.42 temperature 20.0 270 > th dose independent rect. 3 5
29 88.75 temperature 25.0 10 > th dose independent rect. 10 9
39 89.23 temperature 10.0 270 > th dose dependent rect. 8 8
47 89.69 temperature 10.0 90 > th dose dependent rect. 9 10
51 89.83 temperature 20.0 30 > th dose dependent rect. 9 10
53 89.86 temperature 25.0 10 > th dose dependent rect. 9 8
80 90.54 humidity 70.0 30 > th dose independent rect. 6 4
83 90.60 temperature 10.0 90 > th dose dependent rect. 19 14
96 90.95 temperature 25.0 270 < th dose independent rect. 4 15
97 90.96 temperature 30.0 30 < th dose independent rect. 6 16
98 90.97 radiation 1.0 90 > th dose independent rect. 5 4
120 91.21 wind 3.0 10 < th dose independent rect. 6 3
123 91.28 wind 5.0 10 < th dose dependent rect. 6 3
128 91.37 temperature 20.0 90 > th dose independent rect. 5 17
131 91.44 humidity 90.0 30 < th dose independent rect. 6 3
137 91.53 temperature 10.0 90 > th dose dependent rect. 9 20
141 91.55 radiation 30.0 30 < th dose independent rect. 6 4
158 91.73 temperature 20.0 90 > th dose independent rect. 19 14
175 92.02 wind 7.0 30 < th dose independent rect. 9 21
185 92.07 temperature 25.0 30 > th dose independent rect. 2 7
200 92.30 wind 7.0 270 < th dose independent rect. 8 20
209 92.42 temperature 25.0 10 > th dose dependent rect. 9 16
210 92.42 temperature 25.0 10 > th dose dependent rect. 9 20
218 92.47 temperature 30.0 10 < th dose independent rect. 6 4
220 92.51 wind 7.0 270 < th dose independent rect. 9 18
229 92.63 wind 7.0 270 < th dose independent rect. 7 22
237 92.72 temperature 25.0 270 > th dose dependent rect. 22 16
252 92.82 radiation 1.0 90 < th dose independent sin 9 NA
281 92.98 radiation 1.0 90 > th dose independent sin 9 NA
291 93.07 radiation 1.0 90 < th dose dependent sin 8 NA
300 93.10 temperature 25.0 270 > th dose dependent sin 5 NA
339 93.35 wind 5.0 30 < th dose independent rect. 22 8
375 93.58 precipitation 0.1 30 < th dose independent rect. 6 3
377 93.58 temperature 20.0 270 > th dose independent rect. 17 15
378 93.58 precipitation 0.1 30 < th dose dependent rect. 6 3
382 93.61 temperature 10.0 1440 > th dose independent rect. 7 3
385 93.61 atmosphere 995.0 1440 > th dose independent rect. 7 3
386 93.61 atmosphere 1015.0 1440 < th dose independent rect. 7 3
389 93.61 temperature 10.0 1440 > th dose independent rect. 10 21
398 93.65 temperature 10.0 30 > th dose independent rect. 6 3
401 93.65 humidity 50.0 30 > th dose independent rect. 6 3
404 93.65 atmosphere 995.0 30 > th dose independent rect. 6 3
405 93.65 atmosphere 1015.0 30 < th dose independent rect. 6 3
407 93.65 temperature 10.0 30 > th dose independent rect. 9 21
424 93.77 radiation 1.0 90 < th dose independent rect. 22 9
435 93.79 humidity 50.0 30 > th dose dependent rect. 6 4
446 93.88 temperature 10.0 10 > th dose independent rect. 22 8
447 93.88 temperature 30.0 10 < th dose independent rect. 22 8
448 93.88 humidity 50.0 10 > th dose independent rect. 22 8
451 93.88 atmosphere 995.0 10 > th dose independent rect. 22 8
452 93.88 radiation 20.0 10 < th dose independent rect. 22 8
455 93.88 temperature 10.0 10 > th dose independent rect. 6 16
457 93.88 atmosphere 1015.0 10 < th dose independent rect. 6 16
459 93.88 temperature 30.0 10 < th dose dependent rect. 22 8
466 93.90 temperature 20.0 270 > th dose independent rect. 3 19
467 93.90 radiation 40.0 10 < th dose dependent rect. 22 8
471 93.92 radiation 1.0 90 < th dose independent rect. 22 13
484 93.96 radiation 1.0 90 < th dose dependent rect. 22 10
507 94.05 precipitation 0.1 30 < th dose independent rect. 9 21
508 94.05 temperature 25.0 90 > th dose dependent sin 1 NA
511 94.05 precipitation 0.1 30 < th dose dependent rect. 9 21
516 94.07 radiation 1.0 90 < th dose dependent rect. 22 13
543 94.14 precipitation 0.1 10 < th dose independent rect. 6 16
546 94.14 precipitation 0.1 10 < th dose dependent rect. 6 16
568 94.27 temperature 10.0 1440 > th dose independent rect. 23 8
571 94.27 temperature 30.0 1440 < th dose independent rect. 23 8
575 94.27 humidity 50.0 1440 > th dose independent rect. 23 8
580 94.27 atmosphere 995.0 1440 > th dose independent rect. 23 8
581 94.27 radiation 40.0 1440 < th dose independent rect. 23 8
586 94.27 temperature 10.0 1440 > th dose independent rect. 7 16
594 94.30 radiation 30.0 270 < th dose independent rect. 3 6
601 94.36 radiation 40.0 270 < th dose dependent rect. 4 5
620 94.48 precipitation 0.1 30 < th dose independent rect. 22 8
622 94.48 precipitation 0.1 30 < th dose dependent rect. 22 8
642 94.54 temperature 25.0 10 > th dose dependent rect. 2 7
670 94.60 wind 1.0 90 > th dose independent rect. 6 3
694 94.66 temperature 30.0 30 < th dose dependent rect. 6 16
696 94.67 atmosphere 995.0 10 > th dose independent rect. 6 16
704 94.70 temperature 25.0 270 > th dose independent sin 0 NA
716 94.73 wind 9.0 30 < th dose independent rect. 6 16
717 94.74 temperature 30.0 270 < th dose independent rect. 3 6
770 94.96 wind 1.0 10 > th dose independent rect. 6 3
771 94.96 atmosphere 1015.0 90 < th dose dependent rect. 6 1
780 94.99 atmosphere 1015.0 30 < th dose dependent rect. 6 3
786 95.01 radiation 40.0 270 < th dose dependent rect. 3 7
818 95.12 precipitation 0.1 270 < th dose independent rect. 4 3
821 95.12 precipitation 0.1 270 < th dose dependent rect. 4 3
860 95.20 temperature 10.0 270 > th dose independent rect. 7 22
898 95.26 temperature 25.0 270 < th dose independent sin 0 NA
917 95.28 radiation 20.0 30 < th dose dependent sin 10 NA
923 95.29 radiation 40.0 270 < th dose dependent rect. 3 19
932 95.35 precipitation 0.1 270 < th dose independent rect. 9 18
938 95.35 precipitation 0.1 270 < th dose dependent rect. 9 18
958 95.37 humidity 50.0 270 > th dose dependent rect. 4 5
976 95.40 wind 9.0 10 < th dose dependent rect. 22 8
980 95.43 precipitation 0.1 270 < th dose independent rect. 3 6
984 95.43 precipitation 0.1 270 < th dose dependent rect. 3 6
985 95.44 wind 7.0 270 < th dose independent rect. 3 6