Os08g0541400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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Os08g0541400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.05 | 0.407 | 12.3 | -1.52 | 0.362 | 0.778 | 0.222 | 2.01 | -0.493 | 23.1 | 1003 | 2 | -- | -- |
| 75.23 | 0.407 | 12.4 | -1.6 | 0.367 | 1.12 | 0.196 | -- | -0.488 | 23.1 | 1003 | 2 | -- | -- |
| 75.2 | 0.407 | 12.3 | -1.55 | 0.362 | 0.868 | -- | 1.55 | -0.494 | 23.2 | 1003 | 2 | -- | -- |
| 75.39 | 0.407 | 12.4 | -1.61 | 0.365 | 1.12 | -- | -- | -0.489 | 23.2 | 1003 | 2 | -- | -- |
| 83.32 | 0.427 | 12.3 | -1.51 | -- | 0.729 | -- | 2.26 | -0.494 | -- | 1003 | 2 | -- | -- |
| 91.38 | 0.448 | 12.4 | -1.49 | 0.353 | -- | 0.219 | -- | -0.548 | 22.9 | -- | -- | -- | -- |
| 91.58 | 0.448 | 12.4 | -1.5 | 0.352 | -- | -- | -- | -0.549 | 23 | -- | -- | -- | -- |
| 83.72 | 0.428 | 12.3 | -1.6 | -- | 1.1 | -- | -- | -0.488 | -- | 1003 | 2 | -- | -- |
| 142.15 | 0.555 | 12.3 | -- | 0.338 | 0.686 | -- | -- | -0.246 | 23 | 1008 | 2 | -- | -- |
| 99.27 | 0.466 | 12.4 | -1.49 | -- | -- | -- | -- | -0.547 | -- | -- | -- | -- | -- |
| 150.73 | 0.574 | 12.3 | -- | 0.34 | -- | -- | -- | -0.382 | 22.7 | -- | -- | -- | -- |
| 148.47 | 0.568 | 12.3 | -- | -- | 0.697 | -- | -- | -0.254 | -- | 1008 | 305 | -- | -- |
| 157.85 | 0.586 | 12.3 | -- | -- | -- | -- | -- | -0.381 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.22 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 2 | 69.56 | temperature | 20 | 90 | > th | dose dependent | sin | 4 | NA |
| 32 | 71.31 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 72 | 72.66 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 75 | 72.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 80 | 72.75 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 81 | 72.75 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 87 | 72.79 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 93 | 72.84 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 129 | 73.13 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 8 | 15 |
| 130 | 73.15 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 151 | 73.25 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 153 | 73.28 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 154 | 73.29 | atmosphere | 1000 | 10 | < th | dose independent | sin | 21 | NA |
| 155 | 73.29 | atmosphere | 1010 | 10 | < th | dose dependent | sin | 21 | NA |
| 178 | 73.49 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 8 | 18 |
| 183 | 73.51 | atmosphere | 1000 | 30 | > th | dose independent | sin | 21 | NA |
| 185 | 73.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 188 | 73.53 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 8 | 16 |
| 193 | 73.55 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 8 | 16 |
| 250 | 73.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 253 | 73.94 | atmosphere | 995 | 10 | > th | dose dependent | sin | 21 | NA |
| 312 | 74.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 339 | 74.32 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 340 | 74.33 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 364 | 74.44 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 6 | 20 |
| 454 | 74.63 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 472 | 74.69 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 483 | 74.73 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 4 | 22 |
| 578 | 74.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 623 | 75.05 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 629 | 75.07 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 11 | 23 |
| 648 | 75.10 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 8 | 9 |
| 652 | 75.10 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 4 | 20 |
| 661 | 75.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 664 | 75.11 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 4 | 22 |
| 673 | 75.14 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 696 | 75.19 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 23 |
| 706 | 75.22 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 8 | 8 |
| 708 | 75.22 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 19 | 23 |
| 737 | 75.27 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 23 | 23 |
| 744 | 75.28 | atmosphere | 1000 | 10 | > th | dose independent | no | NA | NA |
| 746 | 75.28 | atmosphere | 1000 | 10 | < th | dose independent | no | NA | NA |
| 747 | 75.28 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 21 | 23 |
| 760 | 75.30 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 773 | 75.33 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 21 | 23 |
| 780 | 75.34 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 11 | 23 |
| 781 | 75.34 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 17 | 23 |
| 801 | 75.36 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 1 | 23 |
| 897 | 75.52 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 9 | 23 |
| 922 | 75.56 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 13 | 23 |
| 928 | 75.57 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 15 | 23 |
| 947 | 75.59 | atmosphere | 1010 | 720 | < th | dose dependent | sin | 3 | NA |
| 975 | 75.63 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 15 | 23 |