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Os02g0491400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peptidylprolyl isomerase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0364) R2 : 0.691
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.37 (0.0873) R2dC : 0.505 R2C : 0.55
β3 : -1.94 (0.135) R2dE : 0.142 R2E : 0.186
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00308 (0.0765) R2dN8 : -2.57e-06 R2N8 : -0.00214
σ : 0.682
deviance : 214.44
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C
peak time of C : 11
E
wheather : radiation
threshold : 5.417
memory length : 105
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 20.4
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.92 0.646 11.7 -0.153 2.4 -1.78 1.99 -2.5 -0.0169 11.1 7.392 96 20.5 --
195.55 0.651 11.7 -0.128 2.39 -1.82 2.15 -- -0.0174 11.3 5.302 101 20.1 --
204.29 0.666 11.7 -0.0844 2.34 -1.77 -- -2.72 -0.012 10.8 6.248 105 21 --
214.51 0.682 11.7 -0.0265 2.38 -1.89 -- -- 0.00642 11 5.547 105 20.3 --
241.77 0.724 11.7 -0.097 -- -2.5 -- -2.37 0.0177 -- 44.05 5 5.49 --
246.78 0.736 11.7 -0.127 2.6 -- 2.43 -- 0.0464 12.3 -- -- -- --
272.12 0.773 11.7 -0.0334 2.59 -- -- -- 0.0574 12.3 -- -- -- --
267.74 0.762 11.7 -0.042 -- -2.51 -- -- 0.0424 -- 45.01 5 5.51 --
214.44 0.682 11.7 -- 2.37 -1.94 -- -- 0.00308 11 5.417 105 20.4 --
694.35 1.23 11.7 -0.119 -- -- -- -- 0.0172 -- -- -- -- --
272.15 0.772 11.7 -- 2.59 -- -- -- 0.0611 12.3 -- -- -- --
267.78 0.762 11.7 -- -- -2.51 -- -- 0.0505 -- 44.94 5 5.51 --
694.72 1.23 11.7 -- -- -- -- -- 0.0304 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 182.18 temperature 10.0 10 > th dose dependent rect. 6 21
3 183.37 temperature 30.0 10 < th dose dependent rect. 3 12
23 186.58 temperature 20.0 270 > th dose independent rect. 5 10
29 187.73 temperature 30.0 10 < th dose dependent rect. 3 9
40 189.18 radiation 10.0 90 < th dose dependent rect. 3 16
46 189.95 radiation 10.0 90 < th dose dependent rect. 3 12
52 191.04 atmosphere 1015.0 1440 < th dose independent rect. 3 4
55 191.20 radiation 10.0 90 < th dose dependent sin 3 NA
56 191.24 temperature 25.0 30 < th dose independent rect. 3 11
62 191.56 temperature 15.0 10 > th dose dependent rect. 6 10
63 191.57 precipitation 0.1 270 < th dose independent rect. 15 14
64 191.57 precipitation 0.1 270 < th dose dependent rect. 15 14
68 192.03 radiation 10.0 90 < th dose dependent rect. 3 8
74 192.28 temperature 20.0 270 > th dose independent rect. 5 19
79 192.64 radiation 1.0 90 < th dose independent rect. 3 16
82 192.75 temperature 15.0 10 > th dose dependent rect. 6 8
83 192.81 wind 7.0 270 < th dose independent rect. 15 14
85 192.90 wind 9.0 270 < th dose dependent rect. 15 14
89 193.01 temperature 30.0 10 < th dose dependent sin 4 NA
94 193.21 temperature 15.0 10 > th dose dependent sin 4 NA
107 193.73 temperature 25.0 30 < th dose independent rect. 3 9
111 193.95 precipitation 0.1 10 < th dose independent rect. 3 3
113 193.95 precipitation 0.1 10 < th dose dependent rect. 3 3
131 194.98 temperature 20.0 10 > th dose dependent rect. 6 6
149 195.57 wind 7.0 270 < th dose dependent rect. 1 4
157 195.76 wind 3.0 270 < th dose independent rect. 1 4
165 195.88 temperature 20.0 270 > th dose independent rect. 5 6
191 196.31 wind 3.0 270 < th dose independent rect. 2 2
229 196.92 temperature 30.0 270 < th dose dependent rect. 1 4
230 196.94 temperature 10.0 270 > th dose dependent rect. 20 14
239 197.09 precipitation 0.1 270 < th dose independent rect. 1 4
240 197.09 precipitation 0.1 270 < th dose dependent rect. 1 4
242 197.11 atmosphere 1015.0 270 < th dose independent rect. 5 20
243 197.13 wind 9.0 90 < th dose dependent rect. 17 13
248 197.22 radiation 1.0 90 > th dose independent sin 2 NA
249 197.22 atmosphere 1015.0 30 < th dose independent rect. 6 21
251 197.27 radiation 1.0 90 < th dose independent sin 2 NA
265 197.41 radiation 1.0 90 < th dose independent rect. 3 14
272 197.53 humidity 90.0 720 < th dose independent rect. 18 1
281 197.63 temperature 25.0 90 < th dose independent rect. 2 7
285 197.66 wind 3.0 30 < th dose independent rect. 3 3
290 197.69 temperature 30.0 10 < th dose dependent rect. 2 6
295 197.77 radiation 30.0 4320 < th dose independent rect. 3 4
296 197.78 temperature 25.0 10 > th dose independent rect. 6 6
297 197.78 wind 9.0 30 < th dose dependent rect. 3 3
299 197.83 temperature 25.0 10 > th dose independent rect. 6 8
308 197.90 temperature 25.0 30 > th dose independent sin 4 NA
317 198.03 radiation 10.0 30 < th dose independent rect. 3 6
328 198.11 radiation 1.0 90 < th dose independent rect. 3 10
371 198.41 radiation 1.0 270 < th dose independent rect. 1 11
379 198.46 temperature 10.0 270 > th dose independent rect. 1 4
381 198.46 temperature 30.0 270 < th dose independent rect. 1 4
382 198.46 humidity 50.0 270 > th dose independent rect. 1 4
385 198.46 atmosphere 995.0 270 > th dose independent rect. 1 4
386 198.46 atmosphere 1010.0 270 < th dose independent rect. 1 4
388 198.46 radiation 20.0 270 < th dose independent rect. 1 4
393 198.47 radiation 40.0 270 < th dose dependent rect. 1 4
402 198.51 radiation 1.0 270 < th dose independent rect. 1 4
413 198.62 temperature 25.0 30 < th dose independent sin 4 NA
418 198.70 wind 9.0 270 < th dose dependent rect. 5 9
425 198.74 temperature 10.0 30 > th dose independent rect. 3 3
427 198.74 temperature 30.0 30 < th dose independent rect. 3 3
428 198.74 humidity 50.0 30 > th dose independent rect. 3 3
431 198.74 atmosphere 995.0 30 > th dose independent rect. 3 3
432 198.74 atmosphere 1010.0 30 < th dose independent rect. 3 3
434 198.74 radiation 20.0 30 < th dose independent rect. 3 3
455 198.91 wind 9.0 30 < th dose independent rect. 6 21
475 198.97 wind 5.0 90 < th dose independent rect. 17 13
510 199.30 radiation 40.0 30 < th dose dependent rect. 3 3
549 199.63 wind 9.0 270 < th dose independent rect. 5 20
550 199.63 humidity 50.0 10 > th dose dependent rect. 3 17
582 199.89 humidity 80.0 10 > th dose dependent rect. 3 14
590 199.93 precipitation 0.1 270 < th dose independent rect. 5 10
594 199.93 precipitation 0.1 270 < th dose dependent rect. 5 10
624 200.09 atmosphere 995.0 30 > th dose dependent rect. 3 3
693 200.34 humidity 60.0 14400 > th dose independent rect. 3 4
702 200.41 precipitation 0.1 10 < th dose independent rect. 3 17
704 200.41 precipitation 0.1 10 < th dose dependent rect. 3 17
727 200.59 humidity 90.0 90 < th dose independent rect. 6 11
741 200.66 temperature 20.0 10 > th dose independent rect. 6 10
757 200.76 humidity 50.0 14400 > th dose independent rect. 3 6
767 200.84 wind 9.0 1440 < th dose independent rect. 3 4
768 200.84 temperature 10.0 1440 > th dose independent rect. 3 4
771 200.84 temperature 30.0 1440 < th dose independent rect. 3 4
775 200.84 humidity 50.0 1440 > th dose independent rect. 3 4
780 200.84 atmosphere 995.0 1440 > th dose independent rect. 3 4
785 200.84 temperature 10.0 1440 > th dose independent rect. 7 20
862 201.05 temperature 15.0 10 > th dose dependent rect. 20 16
865 201.07 humidity 50.0 30 > th dose dependent rect. 3 3
929 201.33 wind 9.0 270 < th dose independent rect. 5 10
940 201.39 atmosphere 1015.0 270 < th dose independent rect. 5 10
941 201.39 temperature 10.0 270 > th dose independent rect. 15 14
944 201.42 radiation 40.0 270 < th dose independent rect. 15 14
971 201.50 precipitation 0.1 30 < th dose independent rect. 6 21
972 201.50 precipitation 0.1 30 < th dose dependent rect. 6 21