BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0517200 Os08g0517200|AK121509
(85 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0517200 Similar to Potential calcium-transporting ATPa... 176 3e-45
Os04g0605500 Similar to Calcium-transporting ATPase 8, plas... 142 4e-35
Os02g0176700 Similar to Potential calcium-transporting ATPa... 138 7e-34
Os12g0136900 Similar to Calcium-transporting ATPase 4, plas... 96 4e-21
Os05g0495600 Similar to Calcium-transporting ATPase 4, plas... 96 5e-21
Os03g0203700 Similar to Calcium-transporting ATPase 2, plas... 96 7e-21
Os12g0586600 Similar to Plasma membrane Ca2+-ATPase 96 8e-21
Os03g0616400 Similar to Plasma membrane Ca2+-ATPase 92 8e-20
Os01g0939100 Similar to Calmodulin-stimulated calcium-ATPase 91 2e-19
>Os08g0517200 Similar to Potential calcium-transporting ATPase 9, plasma
membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9)
Length = 85
Score = 176 bits (446), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MVPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTE 60
MVPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTE
Sbjct: 1 MVPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTE 60
Query: 61 WGQLMANLSEDNGEETPLQLWSRCA 85
WGQLMANLSEDNGEETPLQLWSRCA
Sbjct: 61 WGQLMANLSEDNGEETPLQLWSRCA 85
>Os04g0605500 Similar to Calcium-transporting ATPase 8, plasma membrane-type (EC
3.6.3.8) (Ca(2+)-ATPase isoform 8)
Length = 1088
Score = 142 bits (359), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 65/79 (82%), Positives = 74/79 (93%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTEW 61
VPADG+LISGHSL++DESSMTGESK VHKD+K PFLMSGCKVADGYG+MLVT VG NTEW
Sbjct: 293 VPADGILISGHSLSVDESSMTGESKIVHKDQKSPFLMSGCKVADGYGTMLVTAVGINTEW 352
Query: 62 GQLMANLSEDNGEETPLQL 80
G LMA++SED+GEETPLQ+
Sbjct: 353 GLLMASISEDSGEETPLQV 371
>Os02g0176700 Similar to Potential calcium-transporting ATPase 9, plasma
membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9)
Length = 1029
Score = 138 bits (348), Expect = 7e-34, Method: Composition-based stats.
Identities = 65/79 (82%), Positives = 70/79 (88%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTEW 61
VPADGVL+SGHSLAIDESSMTGESK V KD K PFLM GCKVADGYG+MLVT VG NTEW
Sbjct: 250 VPADGVLVSGHSLAIDESSMTGESKIVVKDHKSPFLMGGCKVADGYGTMLVTAVGLNTEW 309
Query: 62 GQLMANLSEDNGEETPLQL 80
G LMA++SEDN EETPLQ+
Sbjct: 310 GLLMASISEDNNEETPLQV 328
>Os12g0136900 Similar to Calcium-transporting ATPase 4, plasma membrane-type (EC
3.6.3.8) (Ca(2+)-ATPase isoform 4)
Length = 1039
Score = 96.3 bits (238), Expect = 4e-21, Method: Composition-based stats.
Identities = 44/79 (55%), Positives = 59/79 (74%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTEW 61
VPADG+ I G+SL IDESS++GES V+ + +PF+++G KV DG M+VT VG TEW
Sbjct: 270 VPADGLYIHGYSLLIDESSLSGESDPVYVSQDKPFILAGTKVQDGSAKMIVTAVGMRTEW 329
Query: 62 GQLMANLSEDNGEETPLQL 80
G+LM+ LSE +ETPLQ+
Sbjct: 330 GKLMSTLSEGGEDETPLQV 348
>Os05g0495600 Similar to Calcium-transporting ATPase 4, plasma membrane-type (EC
3.6.3.8) (Ca(2+)-ATPase isoform 4)
Length = 1038
Score = 96.3 bits (238), Expect = 5e-21, Method: Composition-based stats.
Identities = 45/80 (56%), Positives = 59/80 (73%)
Query: 1 MVPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTE 60
+VPADG+ ISG L IDESS++GES+ V+ ++ PFL +G KV DG MLVT VGT TE
Sbjct: 271 VVPADGLFISGDCLMIDESSLSGESEPVNISEERPFLHAGNKVVDGAAKMLVTAVGTRTE 330
Query: 61 WGQLMANLSEDNGEETPLQL 80
WG++M L+ D +ETPLQ+
Sbjct: 331 WGKIMGTLNGDGVDETPLQV 350
>Os03g0203700 Similar to Calcium-transporting ATPase 2, plasma membrane-type (EC
3.6.3.8) (Ca(2+)-ATPase isoform 2)
Length = 1019
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 59/79 (74%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTEW 61
VPADG+ +SG SL I+ESS+TGES+ V + + PFL+SG KV DG MLVT VG T+W
Sbjct: 270 VPADGLFLSGFSLLINESSLTGESEPVAVNAENPFLLSGTKVQDGSCKMLVTTVGMRTQW 329
Query: 62 GQLMANLSEDNGEETPLQL 80
G+LMA LSE +ETPLQ+
Sbjct: 330 GKLMATLSEGGDDETPLQV 348
>Os12g0586600 Similar to Plasma membrane Ca2+-ATPase
Length = 1020
Score = 95.5 bits (236), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 59/79 (74%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTEW 61
VPADG+ ISG SL I+ESS+TGES+ V ++ PFL+SG KV DG ML+T VG T+W
Sbjct: 270 VPADGLFISGFSLLINESSLTGESEPVVVNEDNPFLLSGTKVQDGSCKMLITTVGMRTQW 329
Query: 62 GQLMANLSEDNGEETPLQL 80
G+LMA LSE +ETPLQ+
Sbjct: 330 GKLMATLSEGGDDETPLQV 348
>Os03g0616400 Similar to Plasma membrane Ca2+-ATPase
Length = 1033
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 58/78 (74%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTEW 61
VPADG+ ISG S+ +DESS+TGES+ V ++ P+L+SG KV DG MLVT VG T+W
Sbjct: 275 VPADGLFISGFSVLVDESSLTGESEPVFVNEDNPYLLSGTKVLDGSCKMLVTAVGMRTQW 334
Query: 62 GQLMANLSEDNGEETPLQ 79
G+LMA L++ +ETPLQ
Sbjct: 335 GKLMAVLTDGGDDETPLQ 352
>Os01g0939100 Similar to Calmodulin-stimulated calcium-ATPase
Length = 1043
Score = 90.5 bits (223), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/79 (53%), Positives = 53/79 (67%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTEW 61
VPADG+ I G+S +DES+++GES+ VH FL+ G KV DG MLVT VG TEW
Sbjct: 273 VPADGLFIDGYSFVVDESNLSGESEPVHVSTANRFLLGGTKVQDGSARMLVTAVGMRTEW 332
Query: 62 GQLMANLSEDNGEETPLQL 80
G LM LS+ +ETPLQ+
Sbjct: 333 GNLMETLSQGGEDETPLQV 351
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.129 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,113,259
Number of extensions: 102183
Number of successful extensions: 177
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 9
Length of query: 85
Length of database: 17,035,801
Length adjustment: 55
Effective length of query: 30
Effective length of database: 14,164,031
Effective search space: 424920930
Effective search space used: 424920930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)