Os02g0176700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Potential calcium-transporting ATPase 9, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9).
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Os02g0176700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Potential calcium-transporting ATPase 9, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.46 | 0.487 | 6.6 | -0.298 | 0.176 | -0.733 | -0.543 | -1.51 | 0.0816 | 11.2 | 4 | 6 | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 122.72 | 0.519 | 6.58 | -0.257 | 0.605 | -- | 0.238 | -- | 0.0746 | 8.59 | -- | -- | -- | -- |
| 122.89 | 0.519 | 6.58 | -0.249 | 0.603 | -- | -- | -- | 0.0749 | 8.67 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 143.42 | 0.56 | 6.6 | -0.247 | -- | -- | -- | -- | 0.08 | -- | -- | -- | -- | -- |
| 124.52 | 0.522 | 6.58 | -- | 0.602 | -- | -- | -- | 0.103 | 8.7 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 145.03 | 0.562 | 6.59 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.37 | radiation | 1.0 | 270 | > th | dose independent | sin | 17 | NA |
| 4 | 103.02 | temperature | 25.0 | 90 | > th | dose independent | rect. | 15 | 5 |
| 5 | 103.09 | humidity | 80.0 | 90 | < th | dose independent | rect. | 15 | 16 |
| 6 | 103.18 | radiation | 1.0 | 270 | < th | dose independent | sin | 17 | NA |
| 7 | 103.22 | radiation | 1.0 | 270 | < th | dose dependent | sin | 17 | NA |
| 16 | 103.63 | temperature | 25.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 18 | 103.78 | humidity | 80.0 | 90 | < th | dose independent | rect. | 15 | 6 |
| 22 | 103.91 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 16 | 7 |
| 25 | 104.05 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 4 |
| 26 | 104.11 | humidity | 80.0 | 270 | < th | dose independent | rect. | 12 | 19 |
| 28 | 104.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 23 |
| 29 | 104.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 32 | 104.24 | radiation | 1.0 | 270 | < th | dose independent | rect. | 13 | 12 |
| 33 | 104.25 | humidity | 80.0 | 10 | < th | dose independent | rect. | 16 | 14 |
| 52 | 104.60 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 13 | 12 |
| 57 | 104.69 | humidity | 80.0 | 90 | < th | dose independent | rect. | 15 | 8 |
| 63 | 104.73 | radiation | 1.0 | 270 | > th | dose independent | rect. | 15 | 3 |
| 64 | 104.73 | humidity | 80.0 | 10 | < th | dose independent | rect. | 16 | 4 |
| 68 | 104.78 | radiation | 1.0 | 270 | > th | dose independent | rect. | 15 | 14 |
| 71 | 104.82 | humidity | 80.0 | 270 | < th | dose independent | rect. | 12 | 8 |
| 73 | 104.85 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 103 | 104.98 | humidity | 80.0 | 90 | < th | dose independent | rect. | 15 | 10 |
| 111 | 105.07 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 121 | 105.08 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 16 | 13 |
| 157 | 105.37 | humidity | 80.0 | 270 | > th | dose independent | rect. | 16 | 7 |
| 170 | 105.49 | humidity | 80.0 | 10 | < th | dose independent | sin | 14 | NA |
| 172 | 105.49 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 13 | 7 |
| 173 | 105.51 | radiation | 1.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 178 | 105.53 | humidity | 80.0 | 90 | < th | dose independent | sin | 15 | NA |
| 200 | 105.66 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 16 | 7 |
| 213 | 105.73 | temperature | 25.0 | 270 | > th | dose independent | rect. | 13 | 7 |
| 225 | 105.78 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 254 | 105.97 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 337 | 106.28 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 16 | 8 |
| 348 | 106.36 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 15 |
| 349 | 106.36 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 15 |
| 410 | 106.65 | humidity | 80.0 | 10 | > th | dose independent | rect. | 16 | 10 |
| 442 | 106.81 | humidity | 80.0 | 720 | < th | dose independent | rect. | 15 | 22 |
| 457 | 106.87 | humidity | 70.0 | 90 | > th | dose independent | rect. | 19 | 6 |
| 470 | 106.94 | humidity | 80.0 | 720 | > th | dose independent | rect. | 15 | 22 |
| 475 | 106.95 | humidity | 80.0 | 720 | > th | dose independent | rect. | 10 | 23 |
| 482 | 106.98 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 487 | 106.99 | humidity | 80.0 | 720 | > th | dose independent | rect. | 8 | 23 |
| 527 | 107.08 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 19 | 6 |
| 545 | 107.12 | humidity | 80.0 | 720 | < th | dose independent | rect. | 23 | 22 |
| 556 | 107.15 | humidity | 80.0 | 720 | < th | dose independent | rect. | 7 | 21 |
| 561 | 107.17 | humidity | 80.0 | 90 | > th | dose independent | sin | 15 | NA |
| 596 | 107.23 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 12 | 19 |
| 605 | 107.26 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 17 | 9 |
| 616 | 107.29 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 1 | 18 |
| 624 | 107.29 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 627 | 107.31 | humidity | 80.0 | 720 | > th | dose independent | rect. | 15 | 18 |
| 649 | 107.35 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 11 | 8 |
| 652 | 107.35 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 705 | 107.46 | humidity | 80.0 | 720 | < th | dose independent | no | NA | NA |
| 712 | 107.47 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 16 |
| 729 | 107.50 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 16 | 16 |
| 732 | 107.51 | humidity | 80.0 | 720 | > th | dose independent | no | NA | NA |
| 746 | 107.54 | humidity | 80.0 | 720 | > th | dose independent | rect. | 3 | 23 |
| 747 | 107.54 | humidity | 80.0 | 720 | > th | dose independent | rect. | 22 | 23 |
| 757 | 107.57 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 6 | 12 |
| 794 | 107.66 | humidity | 80.0 | 10 | < th | dose independent | rect. | 12 | 19 |
| 846 | 107.76 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 15 | 15 |
| 860 | 107.79 | humidity | 70.0 | 270 | > th | dose dependent | sin | 18 | NA |
| 875 | 107.82 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 15 | 3 |
| 887 | 107.85 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 12 | 8 |
| 924 | 107.90 | humidity | 80.0 | 720 | > th | dose independent | rect. | 8 | 17 |
| 938 | 107.92 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 948 | 107.94 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 959 | 107.97 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 6 |
| 961 | 107.97 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 19 | 7 |
| 973 | 107.99 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 6 | 13 |
| 976 | 108.00 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 22 |
| 978 | 108.01 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 980 | 108.02 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 19 | 6 |