Os04g0605500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium-transporting ATPase 8, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 8).
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Os04g0605500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium-transporting ATPase 8, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 8).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.12 | 0.449 | 10.7 | -1.87 | 1.25 | 1.28 | 0.3 | -0.452 | -0.219 | 7.64 | 84.92 | 1261 | -- | -- |
| 91.25 | 0.445 | 10.7 | -1.82 | 1.27 | 1.27 | 0.332 | -- | -0.211 | 7.69 | 85 | 1238 | -- | -- |
| 91.2 | 0.445 | 10.7 | -1.88 | 1.28 | 1.31 | -- | -0.525 | -0.214 | 7.71 | 84 | 1226 | -- | -- |
| 91.52 | 0.446 | 10.7 | -1.82 | 1.28 | 1.27 | -- | -- | -0.213 | 7.72 | 85 | 1221 | -- | -- |
| 171.61 | 0.61 | 10.7 | -1.82 | -- | 1.27 | -- | -0.318 | -0.209 | -- | 86 | 1360 | -- | -- |
| 125.61 | 0.525 | 10.7 | -1.66 | 1.26 | -- | 0.274 | -- | -0.232 | 6.98 | -- | -- | -- | -- |
| 125.81 | 0.525 | 10.7 | -1.65 | 1.26 | -- | -- | -- | -0.232 | 6.98 | -- | -- | -- | -- |
| 171.87 | 0.611 | 10.7 | -1.8 | -- | 1.24 | -- | -- | -0.212 | -- | 86.01 | 1356 | -- | -- |
| 172.94 | 0.612 | 10.7 | -- | 1.25 | 1.15 | -- | -- | -0.0802 | 7.73 | 118 | 1237 | -- | -- |
| 209.31 | 0.676 | 10.7 | -1.63 | -- | -- | -- | -- | -0.209 | -- | -- | -- | -- | -- |
| 197.79 | 0.658 | 10.7 | -- | 1.24 | -- | -- | -- | -0.0483 | 7.06 | -- | -- | -- | -- |
| 251.15 | 0.738 | 10.7 | -- | -- | 1.09 | -- | -- | -0.0652 | -- | 215.5 | 1367 | -- | -- |
| 279.13 | 0.78 | 10.7 | -- | -- | -- | -- | -- | -0.0286 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.95 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 9 | 90.09 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 14 | 90.32 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 20 | 90.65 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 27 | 90.90 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 72 | 92.00 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 79 | 92.10 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 81 | 92.15 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 98 | 92.65 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 113 | 92.90 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 116 | 92.95 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 118 | 92.98 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 19 |
| 126 | 93.07 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 131 | 93.14 | radiation | 20 | 1440 | < th | dose dependent | sin | 14 | NA |
| 133 | 93.15 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 146 | 93.17 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 147 | 93.17 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 4 |
| 222 | 93.23 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 246 | 93.36 | humidity | 80 | 1440 | < th | dose dependent | sin | 14 | NA |
| 249 | 93.37 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 254 | 93.39 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 273 | 93.48 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 283 | 93.51 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 288 | 93.55 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 292 | 93.57 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 347 | 93.73 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 350 | 93.75 | humidity | 50 | 720 | > th | dose dependent | sin | 14 | NA |
| 357 | 93.77 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 408 | 93.94 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 433 | 93.99 | radiation | 10 | 1440 | > th | dose independent | sin | 13 | NA |
| 458 | 94.04 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 487 | 94.18 | radiation | 10 | 1440 | > th | dose independent | sin | 0 | NA |
| 492 | 94.19 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 13 |
| 496 | 94.23 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 524 | 94.30 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 530 | 94.31 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 532 | 94.31 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 676 | 94.62 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 715 | 94.67 | humidity | 70 | 1440 | < th | dose independent | sin | 13 | NA |
| 728 | 94.69 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 735 | 94.72 | humidity | 50 | 1440 | > th | dose dependent | sin | 18 | NA |
| 736 | 94.72 | radiation | 1 | 1440 | > th | dose dependent | sin | 14 | NA |
| 740 | 94.72 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 801 | 94.80 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 16 |
| 810 | 94.81 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 17 |
| 844 | 94.83 | radiation | 20 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 869 | 94.84 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |