Os08g0517200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Potential calcium-transporting ATPase 9, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9).
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Os08g0517200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Potential calcium-transporting ATPase 9, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.99 | 0.423 | 9.06 | -0.534 | 0.811 | -0.95 | -0.624 | 0.685 | 0.261 | 1.67 | 10.01 | 1414 | -- | -- |
| 81.4 | 0.42 | 9.08 | -0.614 | 0.844 | -0.962 | -0.59 | -- | 0.24 | 1.55 | 10 | 1368 | -- | -- |
| 81.97 | 0.422 | 9.06 | -0.494 | 0.843 | -0.964 | -- | 0.565 | 0.268 | 1.35 | 10 | 1366 | -- | -- |
| 82.4 | 0.423 | 9.07 | -0.629 | 0.869 | -0.955 | -- | -- | 0.222 | 1.36 | 10.01 | 1367 | -- | -- |
| 101.68 | 0.47 | 9.08 | -0.425 | -- | -1.05 | -- | 1.65 | 0.146 | -- | 10 | 1744 | -- | -- |
| 106.31 | 0.483 | 9.13 | -0.938 | 0.746 | -- | -0.792 | -- | -0.0549 | 1.81 | -- | -- | -- | -- |
| 108.7 | 0.488 | 9.13 | -0.913 | 0.743 | -- | -- | -- | -0.0498 | 1.63 | -- | -- | -- | -- |
| 102.36 | 0.471 | 9.08 | -0.309 | -- | -0.938 | -- | -- | 0.201 | -- | 2.721 | 1767 | -- | -- |
| 92.07 | 0.447 | 9.08 | -- | 0.899 | -1.14 | -- | -- | 0.274 | 1.17 | 10.01 | 1346 | -- | -- |
| 142.42 | 0.558 | 9.12 | -0.883 | -- | -- | -- | -- | -0.0334 | -- | -- | -- | -- | -- |
| 130.67 | 0.535 | 9.11 | -- | 0.727 | -- | -- | -- | 0.0519 | 1.59 | -- | -- | -- | -- |
| 103.69 | 0.474 | 9.13 | -- | -- | -1.53 | -- | -- | 0.187 | -- | 2.092 | 1807 | -- | -- |
| 162.99 | 0.596 | 9.1 | -- | -- | -- | -- | -- | 0.0646 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.84 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 10 | 78.60 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 12 | 78.85 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 19 |
| 21 | 79.21 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 24 | 79.27 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 16 |
| 34 | 79.58 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 35 | 79.60 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 10 |
| 39 | 79.63 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 45 | 79.68 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 81 | 80.33 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 17 |
| 106 | 80.66 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 108 | 80.68 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 114 | 80.72 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 125 | 80.81 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 22 |
| 130 | 80.87 | radiation | 10 | 1440 | > th | dose independent | rect. | 5 | 9 |
| 145 | 80.90 | humidity | 50 | 720 | > th | dose dependent | sin | 17 | NA |
| 148 | 80.92 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 157 | 81.01 | radiation | 10 | 1440 | > th | dose independent | sin | 3 | NA |
| 160 | 81.02 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 214 | 81.29 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 236 | 81.42 | humidity | 60 | 720 | > th | dose dependent | sin | 19 | NA |
| 253 | 81.47 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 344 | 81.57 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 352 | 81.65 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 17 |
| 404 | 81.89 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 408 | 81.93 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 11 |
| 447 | 82.05 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 455 | 82.09 | radiation | 1 | 720 | < th | dose independent | sin | 20 | NA |
| 468 | 82.16 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 473 | 82.18 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 482 | 82.21 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 483 | 82.23 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 495 | 82.25 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 4 |
| 516 | 82.34 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 519 | 82.35 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 547 | 82.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 561 | 82.43 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 580 | 82.48 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 17 |
| 600 | 82.56 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 606 | 82.60 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 634 | 82.64 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 13 |
| 668 | 82.75 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 677 | 82.79 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 725 | 82.95 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 731 | 82.99 | radiation | 1 | 720 | < th | dose dependent | sin | 20 | NA |
| 740 | 83.03 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 17 |
| 760 | 83.09 | humidity | 80 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 785 | 83.18 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 5 |
| 798 | 83.18 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 827 | 83.25 | humidity | 80 | 720 | < th | dose dependent | sin | 12 | NA |
| 828 | 83.25 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 837 | 83.30 | humidity | 90 | 720 | < th | dose dependent | sin | 14 | NA |
| 838 | 83.30 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 855 | 83.31 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 859 | 83.32 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 903 | 83.37 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 931 | 83.40 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 17 |
| 934 | 83.42 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 945 | 83.42 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 14 |
| 995 | 83.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 996 | 83.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 997 | 83.47 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 12 |