BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0517200 Os08g0517200|AK121509
(85 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G21180.1 | chr3:7425770-7431941 FORWARD LENGTH=1087 143 1e-35
AT5G57110.1 | chr5:23109729-23116857 REVERSE LENGTH=1075 137 8e-34
AT4G29900.1 | chr4:14611225-14618775 REVERSE LENGTH=1070 131 9e-32
AT3G57330.1 | chr3:21211655-21216375 REVERSE LENGTH=1026 99 3e-22
AT3G63380.1 | chr3:23407112-23410213 REVERSE LENGTH=1034 97 2e-21
AT2G41560.1 | chr2:17332256-17337179 REVERSE LENGTH=1031 96 3e-21
AT2G22950.1 | chr2:9766127-9769766 FORWARD LENGTH=1016 96 4e-21
AT4G37640.1 | chr4:17683225-17686808 REVERSE LENGTH=1015 96 4e-21
AT3G22910.1 | chr3:8116335-8119388 REVERSE LENGTH=1018 95 7e-21
AT1G27770.1 | chr1:9671912-9676010 REVERSE LENGTH=1021 94 2e-20
AT5G53010.1 | chr5:21488899-21496537 REVERSE LENGTH=1050 77 3e-15
AT1G10130.1 | chr1:3311139-3321941 FORWARD LENGTH=999 50 3e-07
>AT3G21180.1 | chr3:7425770-7431941 FORWARD LENGTH=1087
Length = 1086
Score = 143 bits (361), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 73/79 (92%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTEW 61
VPADGVLISGHSLAIDESSMTGESK VHKD+K PFLMSGCKVADG G+MLVTGVG NTEW
Sbjct: 302 VPADGVLISGHSLAIDESSMTGESKIVHKDQKSPFLMSGCKVADGVGNMLVTGVGINTEW 361
Query: 62 GQLMANLSEDNGEETPLQL 80
G LMA++SED GEETPLQ+
Sbjct: 362 GLLMASISEDTGEETPLQV 380
>AT5G57110.1 | chr5:23109729-23116857 REVERSE LENGTH=1075
Length = 1074
Score = 137 bits (346), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/80 (85%), Positives = 74/80 (92%), Gaps = 1/80 (1%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKD-KKEPFLMSGCKVADGYGSMLVTGVGTNTE 60
VPADGVLISGHSLA+DESSMTGESK V+KD K+PFLMSGCKVADG GSMLVTGVG NTE
Sbjct: 288 VPADGVLISGHSLALDESSMTGESKIVNKDANKDPFLMSGCKVADGNGSMLVTGVGVNTE 347
Query: 61 WGQLMANLSEDNGEETPLQL 80
WG LMA++SEDNGEETPLQ+
Sbjct: 348 WGLLMASISEDNGEETPLQV 367
>AT4G29900.1 | chr4:14611225-14618775 REVERSE LENGTH=1070
Length = 1069
Score = 131 bits (329), Expect = 9e-32, Method: Composition-based stats.
Identities = 63/80 (78%), Positives = 71/80 (88%), Gaps = 1/80 (1%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKDK-KEPFLMSGCKVADGYGSMLVTGVGTNTE 60
VPADGVL++GHSLA+DESSMTGESK V K+ K PFLMSGCKVADG G+MLVTGVG NTE
Sbjct: 288 VPADGVLVAGHSLAVDESSMTGESKIVQKNSTKHPFLMSGCKVADGNGTMLVTGVGVNTE 347
Query: 61 WGQLMANLSEDNGEETPLQL 80
WG LMA++SEDNG ETPLQ+
Sbjct: 348 WGLLMASVSEDNGGETPLQV 367
>AT3G57330.1 | chr3:21211655-21216375 REVERSE LENGTH=1026
Length = 1025
Score = 99.4 bits (246), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 61/79 (77%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTEW 61
VPADG+ ISG++L IDESS++GES+ H +K++PFL+SG KV +G MLVT VG TEW
Sbjct: 265 VPADGIFISGYNLEIDESSLSGESEPSHVNKEKPFLLSGTKVQNGSAKMLVTTVGMRTEW 324
Query: 62 GQLMANLSEDNGEETPLQL 80
G+LM LSE +ETPLQ+
Sbjct: 325 GKLMDTLSEGGEDETPLQV 343
>AT3G63380.1 | chr3:23407112-23410213 REVERSE LENGTH=1034
Length = 1033
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKDKKE-PFLMSGCKVADGYGSMLVTGVGTNTE 60
+PADG+ + GHSL +DESSMTGES + D K+ PFL SG K+ DG+ MLV VG +T
Sbjct: 260 IPADGLFLEGHSLQVDESSMTGESDHLEVDHKDNPFLFSGTKIVDGFAQMLVVSVGMSTT 319
Query: 61 WGQLMANLSEDNGEETPLQL 80
WGQ M+++++D+ E TPLQ+
Sbjct: 320 WGQTMSSINQDSSERTPLQV 339
>AT2G41560.1 | chr2:17332256-17337179 REVERSE LENGTH=1031
Length = 1030
Score = 96.3 bits (238), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 60/79 (75%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTEW 61
VPADG+ ISG++L IDESS++GES+ H +K++PFL+SG KV +G MLVT VG TEW
Sbjct: 265 VPADGIFISGYNLEIDESSLSGESEPSHVNKEKPFLLSGTKVQNGSAKMLVTTVGMRTEW 324
Query: 62 GQLMANLSEDNGEETPLQL 80
G+LM L + +ETPLQ+
Sbjct: 325 GKLMETLVDGGEDETPLQV 343
>AT2G22950.1 | chr2:9766127-9769766 FORWARD LENGTH=1016
Length = 1015
Score = 95.9 bits (237), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 58/79 (73%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTEW 61
VPADG+ +SG S+ IDESS+TGES+ V + PFL+SG KV DG MLVT VG T+W
Sbjct: 269 VPADGLFLSGFSVVIDESSLTGESEPVMVTAQNPFLLSGTKVQDGSCKMLVTTVGMRTQW 328
Query: 62 GQLMANLSEDNGEETPLQL 80
G+LMA LSE +ETPLQ+
Sbjct: 329 GKLMATLSEGGDDETPLQV 347
>AT4G37640.1 | chr4:17683225-17686808 REVERSE LENGTH=1015
Length = 1014
Score = 95.5 bits (236), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 59/79 (74%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTEW 61
VPADG+ +SG S+ IDESS+TGES+ V + + PFLMSG KV DG M++T VG T+W
Sbjct: 268 VPADGLFLSGFSVVIDESSLTGESEPVMVNAQNPFLMSGTKVQDGSCKMMITTVGMRTQW 327
Query: 62 GQLMANLSEDNGEETPLQL 80
G+LMA L+E +ETPLQ+
Sbjct: 328 GKLMATLTEGGDDETPLQV 346
>AT3G22910.1 | chr3:8116335-8119388 REVERSE LENGTH=1018
Length = 1017
Score = 95.1 bits (235), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKDKK-EPFLMSGCKVADGYGSMLVTGVGTNTE 60
VPADGV + GH L +DESSMTGES V FL SG K+ADG+G M VT VG NT
Sbjct: 255 VPADGVFVEGHLLHVDESSMTGESDHVEVSLTGNTFLFSGTKIADGFGKMAVTSVGMNTA 314
Query: 61 WGQLMANLSEDNGEETPLQ 79
WGQ+M+++S D E+TPLQ
Sbjct: 315 WGQMMSHISRDTNEQTPLQ 333
>AT1G27770.1 | chr1:9671912-9676010 REVERSE LENGTH=1021
Length = 1020
Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 58/79 (73%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKDKKEPFLMSGCKVADGYGSMLVTGVGTNTEW 61
+PADG+ ISG S+ I+ESS+TGES+ V + PFL+SG KV DG MLVT VG T+W
Sbjct: 270 IPADGLFISGFSVLINESSLTGESEPVSVSVEHPFLLSGTKVQDGSCKMLVTTVGMRTQW 329
Query: 62 GQLMANLSEDNGEETPLQL 80
G+LMA LSE +ETPLQ+
Sbjct: 330 GKLMATLSEGGDDETPLQV 348
>AT5G53010.1 | chr5:21488899-21496537 REVERSE LENGTH=1050
Length = 1049
Score = 76.6 bits (187), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 2 VPADGVLISGHSLAIDESSMTGESKTVHKD-KKEPFLMSGCKVADGYGSMLVTGVGTNTE 60
VPADGVL +SL + E +T + V KD + PFL+SG K+ +G G+MLVT VG NTE
Sbjct: 314 VPADGVLFVANSLKVAEQEVTASDEIVQKDLQTNPFLLSGSKLIEGIGTMLVTSVGMNTE 373
Query: 61 WGQLMANLSEDNGEETPLQ 79
WG L +S+ EE P Q
Sbjct: 374 WG-LKMEVSQKTDEEKPFQ 391
>AT1G10130.1 | chr1:3311139-3321941 FORWARD LENGTH=999
Length = 998
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 14/92 (15%)
Query: 2 VPADGVLI--SGHSLAIDESSMTGESKTVHKD------------KKEPFLMSGCKVADGY 47
+PAD +I S ++ +D++ +TGES +V KD K+ L SG V G
Sbjct: 156 IPADLRMIEMSSNTFRVDQAILTGESCSVEKDVDCTLTTNAVYQDKKNILFSGTDVVAGR 215
Query: 48 GSMLVTGVGTNTEWGQLMANLSEDNGEETPLQ 79
G +V GVG+NT G + ++ + + E TPL+
Sbjct: 216 GRAVVIGVGSNTAMGSIHDSMLQTDDEATPLK 247
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.129 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,004,470
Number of extensions: 68572
Number of successful extensions: 145
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 12
Length of query: 85
Length of database: 11,106,569
Length adjustment: 56
Effective length of query: 29
Effective length of database: 9,571,273
Effective search space: 277566917
Effective search space used: 277566917
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 104 (44.7 bits)