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Os05g0495600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Calcium-transporting ATPase 4, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.58 (0.0249) R2 : 0.823
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.57 (0.0779) R2dE : 0.818 R2E : 0.819
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.141 (0.0524) R2dN8 : 0.00361 R2N8 : 0.00514
σ : 0.468
deviance : 100.9
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.3836
memory length : 709
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.65 0.452 8.51 0.148 2.59 1.81 -0.71 -1 -0.167 8.61 0.4702 236 -- --
96.74 0.458 8.52 0.107 2.57 1.81 -0.0555 -- -0.174 8.63 0.49 236 -- --
93.88 0.451 8.52 0.12 2.58 1.81 -- -0.726 -0.168 8.62 0.4826 235 -- --
96.71 0.458 8.52 0.107 2.57 1.79 -- -- -0.177 8.61 0.4851 235 -- --
151.57 0.573 8.55 -0.465 -- 2.6 -- -0.402 -0.479 -- 0.3501 669 -- --
116.42 0.506 8.55 -0.0353 2.94 -- -0.759 -- -0.267 5.64 -- -- -- --
117.83 0.508 8.55 -0.0388 2.94 -- -- -- -0.264 5.65 -- -- -- --
103.08 0.473 8.58 0.179 -- 3.25 -- -- -0.106 -- 0.3503 683 -- --
97 0.459 8.52 -- 2.57 1.78 -- -- -0.189 8.59 0.49 235 -- --
565.7 1.11 8.6 0.0551 -- -- -- -- -0.193 -- -- -- -- --
117.87 0.508 8.55 -- 2.94 -- -- -- -0.259 5.65 -- -- -- --
100.9 0.468 8.58 -- -- 3.57 -- -- -0.141 -- 0.3836 709 -- --
565.78 1.11 8.6 -- -- -- -- -- -0.199 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.26 radiation 1.0 720 < th dose dependent rect. 8 21
2 87.66 radiation 1.0 720 < th dose independent rect. 17 4
5 88.08 radiation 1.0 720 < th dose dependent rect. 14 15
6 88.10 radiation 1.0 720 < th dose dependent rect. 24 22
7 88.12 radiation 10.0 720 < th dose dependent rect. 15 7
9 88.18 radiation 1.0 720 < th dose dependent rect. 1 20
15 88.41 radiation 10.0 270 < th dose dependent rect. 16 13
19 88.54 radiation 1.0 720 < th dose dependent rect. 17 4
20 88.61 radiation 1.0 270 < th dose independent rect. 16 13
23 89.00 radiation 1.0 720 < th dose independent rect. 8 21
25 89.10 radiation 1.0 720 < th dose independent rect. 24 22
34 89.41 radiation 1.0 720 < th dose independent rect. 1 20
39 89.56 radiation 1.0 720 < th dose independent rect. 8 13
47 89.85 radiation 1.0 720 > th dose independent rect. 12 22
67 90.58 precipitation 0.1 720 < th dose independent rect. 6 19
68 90.58 precipitation 0.1 720 < th dose dependent rect. 6 19
71 90.75 precipitation 0.1 720 < th dose independent rect. 12 7
72 90.75 precipitation 0.1 720 < th dose dependent rect. 12 7
78 90.95 radiation 1.0 720 > th dose independent rect. 13 5
96 91.23 radiation 1.0 720 < th dose dependent rect. 8 13
107 91.49 humidity 50.0 90 > th dose dependent rect. 19 12
110 91.50 precipitation 0.1 720 < th dose independent rect. 5 14
111 91.50 precipitation 0.1 720 < th dose dependent rect. 5 14
112 91.54 humidity 50.0 270 > th dose dependent rect. 17 12
116 91.56 precipitation 0.1 720 < th dose independent rect. 7 17
117 91.56 precipitation 0.1 720 < th dose dependent rect. 7 17
118 91.59 radiation 1.0 270 < th dose dependent rect. 16 21
121 91.71 precipitation 0.1 270 < th dose independent rect. 13 12
122 91.71 precipitation 0.1 270 < th dose dependent rect. 13 12
151 92.00 precipitation 0.1 720 < th dose independent rect. 12 15
153 92.00 precipitation 0.1 720 < th dose dependent rect. 12 15
155 92.02 precipitation 0.1 720 < th dose independent rect. 13 21
156 92.02 precipitation 0.1 720 < th dose dependent rect. 13 21
179 92.27 precipitation 0.1 720 < th dose independent rect. 21 21
180 92.27 precipitation 0.1 720 < th dose dependent rect. 21 21
186 92.39 radiation 1.0 270 < th dose independent rect. 16 21
189 92.43 precipitation 0.1 720 < th dose independent rect. 15 9
191 92.43 precipitation 0.1 720 < th dose dependent rect. 15 9
243 92.98 precipitation 0.1 720 < th dose independent rect. 22 19
245 92.98 precipitation 0.1 720 < th dose dependent rect. 22 19
248 93.03 temperature 30.0 270 < th dose independent rect. 17 12
259 93.11 humidity 90.0 10 < th dose independent rect. 7 13
262 93.16 humidity 70.0 90 > th dose independent rect. 19 12
269 93.23 humidity 70.0 270 > th dose independent rect. 17 12
270 93.24 precipitation 0.1 90 < th dose independent rect. 7 12
271 93.24 precipitation 0.1 90 < th dose dependent rect. 7 12
276 93.28 temperature 10.0 10 > th dose dependent rect. 7 13
304 93.63 wind 9.0 720 < th dose independent rect. 21 13
308 93.70 wind 9.0 720 < th dose independent rect. 22 11
312 93.72 temperature 10.0 720 > th dose independent rect. 22 11
313 93.72 humidity 50.0 720 > th dose independent rect. 22 11
314 93.72 atmosphere 995.0 720 > th dose independent rect. 22 11
315 93.72 temperature 10.0 720 > th dose independent rect. 9 13
317 93.73 temperature 10.0 720 > th dose independent rect. 10 11
318 93.73 temperature 10.0 720 > th dose independent rect. 21 13
319 93.73 atmosphere 995.0 720 > th dose independent rect. 21 13
327 93.79 temperature 15.0 90 > th dose independent rect. 7 12
352 93.86 humidity 70.0 30 > th dose dependent rect. 11 20
356 93.90 humidity 50.0 720 > th dose independent rect. 21 13
363 93.96 precipitation 0.1 720 < th dose independent rect. 21 13
364 93.96 precipitation 0.1 720 < th dose dependent rect. 21 13
365 93.97 temperature 15.0 720 > th dose independent rect. 5 5
374 94.04 temperature 15.0 270 > th dose independent rect. 5 12
388 94.14 humidity 50.0 720 > th dose independent rect. 17 5
395 94.18 precipitation 0.1 720 < th dose independent rect. 22 11
396 94.18 precipitation 0.1 720 < th dose dependent rect. 22 11
408 94.33 precipitation 0.1 270 < th dose independent rect. 5 12
409 94.33 precipitation 0.1 270 < th dose dependent rect. 5 12
425 94.53 radiation 1.0 720 < th dose independent sin 14 NA
439 94.63 humidity 50.0 30 > th dose dependent rect. 10 21
476 94.88 radiation 10.0 720 < th dose dependent sin 14 NA
482 94.90 radiation 40.0 720 < th dose independent rect. 22 11
493 95.00 radiation 30.0 90 < th dose dependent rect. 19 12
494 95.01 temperature 15.0 720 > th dose independent rect. 6 3
499 95.07 precipitation 0.1 720 < th dose independent rect. 7 10
500 95.07 precipitation 0.1 720 < th dose dependent rect. 7 10
503 95.08 radiation 1.0 270 < th dose dependent no NA NA
510 95.16 humidity 70.0 10 > th dose independent rect. 19 12
550 95.38 precipitation 0.1 720 < th dose independent rect. 5 5
551 95.38 precipitation 0.1 720 < th dose dependent rect. 5 5
552 95.39 atmosphere 1015.0 720 < th dose independent rect. 10 11
555 95.40 temperature 10.0 720 > th dose dependent rect. 13 4
557 95.42 atmosphere 995.0 720 > th dose independent rect. 17 5
585 95.63 radiation 1.0 720 > th dose independent sin 14 NA
586 95.64 radiation 1.0 270 < th dose independent no NA NA
599 95.68 wind 9.0 720 < th dose independent rect. 5 5
600 95.70 radiation 1.0 270 > th dose independent no NA NA
601 95.70 radiation 1.0 270 > th dose independent rect. 4 15
665 95.77 atmosphere 995.0 720 > th dose independent rect. 5 5
666 95.77 atmosphere 1015.0 720 < th dose independent rect. 5 5
667 95.77 temperature 10.0 720 > th dose independent rect. 10 19
676 95.88 temperature 10.0 720 > th dose independent rect. 17 5
677 95.88 radiation 30.0 720 < th dose independent rect. 17 5
679 95.88 atmosphere 995.0 270 > th dose independent rect. 17 12
680 95.88 temperature 10.0 720 > th dose independent rect. 22 19
686 95.90 radiation 10.0 90 < th dose independent rect. 19 12
691 95.94 humidity 50.0 720 > th dose independent rect. 5 5
702 96.03 wind 9.0 270 < th dose independent rect. 17 12
706 96.04 temperature 10.0 270 > th dose independent rect. 17 12
707 96.04 atmosphere 1015.0 270 < th dose independent rect. 5 12
715 96.06 radiation 1.0 720 > th dose independent rect. 6 12
736 96.18 atmosphere 995.0 720 > th dose independent rect. 18 3
754 96.24 temperature 30.0 720 < th dose independent rect. 22 10
758 96.24 wind 9.0 90 < th dose independent rect. 7 12
779 96.32 wind 9.0 270 < th dose independent rect. 5 12
785 96.38 radiation 1.0 720 > th dose independent rect. 7 10
796 96.47 humidity 50.0 270 > th dose dependent rect. 8 21
806 96.58 humidity 80.0 720 < th dose independent rect. 14 3
810 96.62 radiation 20.0 720 < th dose independent rect. 16 15
823 96.66 temperature 10.0 90 > th dose independent rect. 19 12
824 96.66 temperature 30.0 90 < th dose independent rect. 19 12
825 96.66 humidity 50.0 90 > th dose independent rect. 19 12
827 96.66 atmosphere 995.0 90 > th dose independent rect. 19 12
828 96.66 atmosphere 1015.0 90 < th dose independent rect. 7 12
829 96.66 radiation 40.0 90 < th dose independent rect. 19 12
842 96.69 temperature 30.0 1440 < th dose independent rect. 20 12
856 96.70 humidity 80.0 10 > th dose dependent rect. 11 12
857 96.71 wind 9.0 90 < th dose independent rect. 19 12
863 96.77 atmosphere 1015.0 720 < th dose independent rect. 22 11
864 96.78 wind 9.0 720 < th dose independent rect. 17 5
882 96.83 radiation 1.0 720 < th dose dependent sin 0 NA
889 96.91 atmosphere 995.0 720 > th dose independent rect. 18 19
914 97.07 precipitation 0.1 720 < th dose independent rect. 6 3
916 97.07 precipitation 0.1 720 < th dose dependent rect. 6 3
932 97.19 wind 9.0 720 < th dose independent rect. 6 3
934 97.19 humidity 50.0 720 > th dose independent rect. 6 3
935 97.19 atmosphere 995.0 720 > th dose independent rect. 6 3
936 97.19 atmosphere 1015.0 720 < th dose independent rect. 6 3
937 97.19 temperature 10.0 720 > th dose independent rect. 9 21
955 97.26 temperature 10.0 720 > th dose independent rect. 18 3
957 97.26 radiation 20.0 720 < th dose independent rect. 18 3
961 97.26 temperature 10.0 720 > th dose independent rect. 21 21
964 97.28 temperature 10.0 720 > th dose independent rect. 10 3
965 97.28 atmosphere 995.0 720 > th dose independent rect. 10 3
966 97.28 atmosphere 1015.0 720 < th dose independent rect. 10 3
968 97.28 temperature 10.0 720 > th dose independent rect. 13 21
972 97.31 wind 9.0 720 < th dose independent rect. 18 3
975 97.34 precipitation 0.1 720 < th dose independent rect. 10 3
979 97.34 precipitation 0.1 720 < th dose dependent rect. 10 3
981 97.35 wind 9.0 720 < th dose independent rect. 22 3
986 97.37 temperature 10.0 720 > th dose independent rect. 22 3
987 97.37 temperature 30.0 720 < th dose independent rect. 22 3
988 97.37 humidity 50.0 720 > th dose independent rect. 22 3
991 97.37 atmosphere 995.0 720 > th dose independent rect. 22 3
992 97.37 radiation 1.0 720 < th dose independent rect. 22 3
997 97.37 temperature 10.0 720 > th dose independent rect. 1 21
998 97.37 radiation 1.0 720 < th dose dependent rect. 22 3