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Os03g0616400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Plasma membrane Ca2+-ATPase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.69 (0.0455) R2 : 0.841
β1 : -1.04 (0.166) R2dD : 0.0146 R2D : 0.0183
β2 : 5.86 (0.122) R2dC : 0.86 R2C : 0.77
β3 : 1.45 (0.141) R2dE : 0.0407 R2E : -0.0637
β4 : 3.28 (0.545) R2dD*C : 0.0131 R2D*C : 0.0165
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.517 (0.0988) R2dN8 : 0.0134 R2N8 : -0.0014
σ : 0.847
deviance : 330.99
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_____
C
peak time of C : 17.9
E
wheather : humidity
threshold : 89
memory length : 558
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.8
open length of G : 1.65

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
330.92 0.855 7.7 -1.02 5.86 1.43 3.21 -0.266 0.521 18 89 568 21.8 1.67
330.99 0.847 7.69 -1.04 5.86 1.45 3.28 -- 0.517 17.9 89 558 21.8 1.65
355.47 0.878 7.68 -1.04 5.87 1.44 -- -0.354 0.529 17.9 90 559 21.7 1.75
357.56 0.881 7.69 -1.05 5.86 1.45 -- -- 0.515 17.9 89 557 21.6 1.68
1997.86 2.08 7.57 -0.615 -- 1.56 -- -0.0941 0.716 -- 85 17431 21.5 1.7
396.19 0.933 7.74 -0.939 5.57 -- 3 -- 0.305 18.2 -- -- -- --
418.39 0.958 7.74 -0.972 5.58 -- -- -- 0.315 18.2 -- -- -- --
1991.29 2.08 7.57 -1.09 -- 1.56 -- -- 0.715 -- 85 17428 21.5 1.62
388.33 0.918 7.71 -- 5.84 1.36 -- -- 0.529 18 88 556 21.6 1.73
2036.09 2.11 7.64 -1.13 -- -- -- -- 0.193 -- -- -- -- --
443.3 0.985 7.71 -- 5.6 -- -- -- 0.423 18.2 -- -- -- --
2020.2 2.09 7.57 -- -- 1.52 -- -- 0.715 -- 84.85 17416 21.9 1.27
2069.49 2.12 7.61 -- -- -- -- -- 0.317 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 336.69 temperature 25.0 720 > th dose dependent rect. 20 1
4 341.49 humidity 90.0 720 > th dose dependent rect. 22 1
5 341.80 radiation 20.0 1440 < th dose dependent rect. 11 1
10 343.01 humidity 90.0 720 > th dose independent rect. 21 2
13 343.75 humidity 90.0 720 > th dose dependent rect. 20 4
18 345.68 humidity 90.0 720 > th dose independent rect. 20 4
22 346.22 humidity 50.0 30 > th dose dependent rect. 23 18
29 347.01 radiation 10.0 30 < th dose dependent rect. 23 18
30 347.02 humidity 50.0 30 > th dose dependent rect. 23 16
31 347.08 humidity 70.0 1440 > th dose independent rect. 11 1
32 347.09 radiation 1.0 1440 > th dose dependent rect. 11 1
33 347.38 radiation 10.0 1440 > th dose independent rect. 11 1
34 347.38 humidity 90.0 720 < th dose independent rect. 20 3
36 347.46 radiation 10.0 30 < th dose dependent rect. 23 15
39 348.03 humidity 70.0 1440 < th dose independent rect. 11 1
46 348.87 radiation 1.0 30 < th dose independent rect. 23 18
51 349.46 humidity 90.0 720 < th dose dependent rect. 20 1
57 350.31 radiation 10.0 1440 < th dose dependent rect. 10 4
66 350.90 humidity 70.0 30 > th dose dependent rect. 23 5
69 351.11 radiation 1.0 30 < th dose independent rect. 23 15
72 351.34 radiation 20.0 1440 > th dose independent rect. 16 20
75 351.41 radiation 10.0 30 < th dose dependent rect. 23 11
77 351.47 precipitation 0.1 270 > th dose independent rect. 24 4
82 351.59 temperature 25.0 270 > th dose independent rect. 8 6
87 351.88 humidity 60.0 1440 > th dose dependent rect. 11 2
90 351.91 temperature 25.0 720 > th dose independent rect. 20 2
110 352.51 radiation 20.0 1440 < th dose dependent rect. 8 9
115 352.62 humidity 70.0 1440 > th dose independent rect. 19 19
125 352.88 humidity 80.0 1440 < th dose dependent rect. 11 1
132 352.97 radiation 10.0 1440 > th dose independent rect. 8 5
142 353.12 radiation 1.0 30 < th dose independent rect. 23 13
146 353.34 radiation 10.0 1440 > th dose independent rect. 6 8
161 353.42 precipitation 0.1 270 > th dose dependent rect. 24 4
164 353.48 precipitation 0.1 270 > th dose dependent rect. 2 2
165 353.50 radiation 1.0 30 < th dose independent rect. 23 9
169 353.51 radiation 20.0 1440 < th dose dependent rect. 24 17
170 353.54 humidity 90.0 720 > th dose dependent rect. 14 10
173 353.56 radiation 20.0 1440 < th dose dependent rect. 2 15
181 353.62 radiation 20.0 1440 < th dose dependent sin 23 NA
183 353.63 humidity 60.0 1440 > th dose dependent rect. 9 5
190 353.66 temperature 25.0 270 < th dose independent rect. 2 9
192 353.71 radiation 20.0 1440 < th dose independent rect. 11 1
199 353.83 radiation 20.0 1440 < th dose dependent rect. 9 22
201 353.84 humidity 90.0 720 > th dose dependent rect. 12 12
215 354.00 humidity 70.0 1440 > th dose independent rect. 9 5
244 354.13 radiation 20.0 1440 < th dose dependent rect. 8 19
254 354.17 radiation 20.0 1440 < th dose dependent rect. 8 17
256 354.19 humidity 90.0 1440 < th dose dependent rect. 5 9
276 354.33 humidity 90.0 720 < th dose dependent rect. 19 4
284 354.38 radiation 20.0 1440 < th dose dependent rect. 15 23
286 354.40 radiation 10.0 1440 > th dose independent rect. 15 23
302 354.47 atmosphere 1000.0 30 > th dose independent rect. 23 5
304 354.47 radiation 10.0 1440 > th dose dependent rect. 16 20
366 354.76 humidity 90.0 1440 < th dose dependent rect. 9 5
381 354.81 temperature 25.0 30 < th dose independent rect. 22 6
384 354.82 radiation 10.0 1440 > th dose independent sin 3 NA
392 354.86 humidity 70.0 270 > th dose dependent rect. 23 1
406 354.91 temperature 25.0 270 > th dose independent rect. 10 1
428 354.95 humidity 70.0 1440 < th dose independent rect. 18 20
441 354.96 radiation 20.0 1440 < th dose dependent rect. 2 23
451 354.98 radiation 20.0 1440 < th dose dependent no NA NA
459 355.00 humidity 80.0 1440 < th dose independent rect. 7 7
548 355.38 radiation 10.0 1440 > th dose independent rect. 6 11
567 355.45 humidity 70.0 1440 > th dose independent rect. 24 14
591 355.53 humidity 70.0 1440 > th dose independent rect. 2 12
611 355.59 radiation 10.0 1440 < th dose independent rect. 11 6
612 355.59 humidity 70.0 1440 > th dose independent rect. 4 10
627 355.66 radiation 10.0 1440 < th dose dependent rect. 13 1
633 355.71 radiation 1.0 1440 > th dose dependent rect. 13 23
637 355.75 temperature 30.0 30 < th dose dependent rect. 23 5
642 355.80 wind 1.0 270 < th dose independent rect. 3 2
644 355.80 radiation 30.0 1440 < th dose dependent rect. 13 23
685 355.90 temperature 30.0 30 < th dose independent rect. 4 8
719 356.01 humidity 80.0 1440 < th dose dependent rect. 20 18
837 356.23 radiation 20.0 1440 < th dose independent rect. 15 23
852 356.25 humidity 60.0 1440 > th dose dependent rect. 5 9
873 356.29 radiation 1.0 1440 > th dose dependent rect. 8 9
911 356.44 radiation 20.0 1440 < th dose independent rect. 8 9
946 356.57 radiation 1.0 1440 > th dose dependent sin 2 NA
988 356.65 radiation 20.0 1440 < th dose independent rect. 8 21