Os12g0136900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium-transporting ATPase 4, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4).
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Os12g0136900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium-transporting ATPase 4, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.84 | 0.401 | 9.49 | -0.182 | 1.63 | -1.66 | -0.265 | 2.65 | -0.144 | 17.3 | 26.01 | 6045 | -- | -- |
| 77.15 | 0.409 | 9.51 | -0.676 | 1.53 | -1.58 | -0.306 | -- | -0.0134 | 17.4 | 23.2 | 9581 | -- | -- |
| 73 | 0.398 | 9.49 | -0.183 | 1.63 | -1.66 | -- | 2.64 | -0.142 | 17.3 | 26 | 6047 | -- | -- |
| 77.13 | 0.409 | 9.52 | -0.725 | 1.55 | -1.51 | -- | -- | -0.0553 | 17.4 | 23.26 | 9410 | -- | -- |
| 197.07 | 0.654 | 9.47 | -0.358 | -- | -1.57 | -- | 1.8 | -0.154 | -- | 25.09 | 7091 | -- | -- |
| 147.24 | 0.569 | 9.67 | -1.62 | 1.6 | -- | -0.217 | -- | -0.728 | 17.2 | -- | -- | -- | -- |
| 147.35 | 0.568 | 9.67 | -1.62 | 1.59 | -- | -- | -- | -0.729 | 17.2 | -- | -- | -- | -- |
| 197.67 | 0.655 | 9.5 | -0.797 | -- | -1.6 | -- | -- | -0.0859 | -- | 23.8 | 9928 | -- | -- |
| 83.7 | 0.426 | 9.53 | -- | 1.55 | -1.66 | -- | -- | -0.072 | 17.1 | 20.6 | 24128 | -- | -- |
| 280.37 | 0.782 | 9.66 | -1.67 | -- | -- | -- | -- | -0.769 | -- | -- | -- | -- | -- |
| 216.2 | 0.688 | 9.63 | -- | 1.62 | -- | -- | -- | -0.549 | 17.2 | -- | -- | -- | -- |
| 209.8 | 0.675 | 9.42 | -- | -- | -1.9 | -- | -- | 0.117 | -- | 23.7 | 9949 | -- | -- |
| 354.12 | 0.878 | 9.61 | -- | -- | -- | -- | -- | -0.584 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 9 |
| 7 | 73.93 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 13 | 74.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 47 | 74.79 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 49 | 74.81 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 55 | 74.90 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 79 | 75.09 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 81 | 75.12 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 83 | 75.12 | temperature | 20 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 113 | 75.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 173 | 75.58 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 208 | 75.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 225 | 75.75 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 9 |
| 239 | 75.78 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 289 | 75.90 | temperature | 25 | 14400 | > th | dose dependent | sin | 17 | NA |
| 299 | 75.93 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 9 |
| 338 | 76.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 2 |
| 358 | 76.07 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 433 | 76.27 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 631 | 76.69 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 679 | 76.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 681 | 76.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 697 | 76.82 | humidity | 90 | 43200 | > th | dose dependent | sin | 18 | NA |
| 703 | 76.83 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 723 | 76.86 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 760 | 76.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 761 | 76.93 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 789 | 76.98 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 864 | 77.08 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 956 | 77.21 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 22 |
| 978 | 77.25 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |