BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0490900 Os08g0490900|J065192G18
(150 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0490900 Similar to Histone H2B.2 187 3e-48
Os01g0152300 Similar to Histone H2B.1 182 7e-47
Os01g0152900 Similar to Histone H2B.1 182 7e-47
Os01g0149600 Similar to Histone H2B.1 182 8e-47
Os01g0839500 Histone H2B family protein 181 2e-46
Os01g0153300 Similar to Histone H2B.1 159 6e-40
Os01g0153100 Similar to Histone H2B-3 (Fragment) 159 9e-40
Os05g0574300 Similar to Histone H2B.2 159 9e-40
Os05g0460500 Similar to Histone H2B.2 150 3e-37
AK108119 149 6e-37
AK106505 112 1e-25
Os09g0570850 Histone H2B family protein 112 1e-25
Os08g0490800 95 1e-20
AK108978 91 4e-19
Os01g0152700 Similar to Histone H2B (CaH2B) 82 2e-16
>Os08g0490900 Similar to Histone H2B.2
Length = 150
Score = 187 bits (474), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/116 (81%), Positives = 94/116 (81%)
Query: 35 RLPXXXXXXXXXXXXXXXXXXXXXXVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFIND 94
RLP VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFIND
Sbjct: 35 RLPASKGEKGGEGKKERGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFIND 94
Query: 95 IFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
IFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 95 IFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
>Os01g0152300 Similar to Histone H2B.1
Length = 153
Score = 182 bits (462), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 89/91 (97%), Positives = 91/91 (100%)
Query: 60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 119
VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGE+AKLARYNKKPTITSRE
Sbjct: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSRE 122
Query: 120 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
IQTSVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 123 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
>Os01g0152900 Similar to Histone H2B.1
Length = 153
Score = 182 bits (462), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 89/91 (97%), Positives = 91/91 (100%)
Query: 60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 119
VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGE+AKLARYNKKPTITSRE
Sbjct: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSRE 122
Query: 120 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
IQTSVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 123 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
>Os01g0149600 Similar to Histone H2B.1
Length = 153
Score = 182 bits (462), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 89/91 (97%), Positives = 91/91 (100%)
Query: 60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 119
VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGE+AKLARYNKKPTITSRE
Sbjct: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSRE 122
Query: 120 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
IQTSVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 123 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
>Os01g0839500 Histone H2B family protein
Length = 139
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/91 (97%), Positives = 90/91 (98%)
Query: 60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 119
VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLA EAA+LARYNKKPTITSRE
Sbjct: 49 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSRE 108
Query: 120 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 109 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139
>Os01g0153300 Similar to Histone H2B.1
Length = 155
Score = 159 bits (403), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/91 (97%), Positives = 90/91 (98%)
Query: 60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 119
VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLA EAAKLARYNKKPTITSRE
Sbjct: 65 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSRE 124
Query: 120 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
IQTSVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 125 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 155
>Os01g0153100 Similar to Histone H2B-3 (Fragment)
Length = 153
Score = 159 bits (401), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 89/91 (97%), Positives = 90/91 (98%)
Query: 60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 119
VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLA EAAKLARYNKKPTITSRE
Sbjct: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSRE 122
Query: 120 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
IQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 123 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
>Os05g0574300 Similar to Histone H2B.2
Length = 152
Score = 159 bits (401), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 89/91 (97%), Positives = 90/91 (98%)
Query: 60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 119
VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLA EAAKLARYNKKPTITSRE
Sbjct: 62 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSRE 121
Query: 120 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
IQTSVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 122 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 152
>Os05g0460500 Similar to Histone H2B.2
Length = 118
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/77 (94%), Positives = 75/77 (97%)
Query: 74 VHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELA 133
VHPDIGISSKAMSIMNSF+NDIFEKL EAA+LARYNKKPTITSREIQTSVRLVLPGELA
Sbjct: 42 VHPDIGISSKAMSIMNSFVNDIFEKLEQEAARLARYNKKPTITSREIQTSVRLVLPGELA 101
Query: 134 KHAVSEGTKAVTKFTSS 150
KHAVSEGTKAVTKFTSS
Sbjct: 102 KHAVSEGTKAVTKFTSS 118
>AK108119
Length = 142
Score = 149 bits (377), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 83/90 (92%)
Query: 61 ETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREI 120
ETY YI++VLKQVHPD GIS+KAM+I+NSF+ DIFE++A EA+KLA YNKK TI+SREI
Sbjct: 52 ETYSTYIYRVLKQVHPDTGISNKAMAILNSFVQDIFERIATEASKLASYNKKSTISSREI 111
Query: 121 QTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
QT+VRL+LPGEL+KHA+SEGTK+VTKF+SS
Sbjct: 112 QTAVRLILPGELSKHAISEGTKSVTKFSSS 141
>AK106505
Length = 194
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 72/87 (82%)
Query: 63 YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQT 122
YK Y+++VLKQVHPD+G S++ M +++ + D+FE+LA EA++L++ + + T+TSRE+Q+
Sbjct: 108 YKRYVWRVLKQVHPDLGASAQTMDVLDMMMADMFERLADEASRLSKLSGRLTLTSREVQS 167
Query: 123 SVRLVLPGELAKHAVSEGTKAVTKFTS 149
+VRLVLP +LA HA+SEGTKA++ + S
Sbjct: 168 AVRLVLPADLANHAISEGTKAISNYLS 194
>Os09g0570850 Histone H2B family protein
Length = 194
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 72/87 (82%)
Query: 63 YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQT 122
YK Y+++VLKQVHPD+G S++ M +++ + D+FE+LA EA++L++ + + T+TSRE+Q+
Sbjct: 108 YKRYVWRVLKQVHPDLGASAQTMDVLDMMMADMFERLADEASRLSKLSGRLTLTSREVQS 167
Query: 123 SVRLVLPGELAKHAVSEGTKAVTKFTS 149
+VRLVLP +LA HA+SEGTKA++ + S
Sbjct: 168 AVRLVLPADLANHAISEGTKAISNYLS 194
>Os08g0490800
Length = 79
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 48/51 (94%)
Query: 95 IFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVT 145
+FEKL GEAAKLARYNKKPTITSREIQTSVRLVL GELAKHAVSEG KAVT
Sbjct: 1 MFEKLVGEAAKLARYNKKPTITSREIQTSVRLVLLGELAKHAVSEGAKAVT 51
>AK108978
Length = 320
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 67 IFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRL 126
+++ LK+V P++GIS+K M+++NS ++D+ +LA EA +LARYN + T+T+R IQT+VRL
Sbjct: 8 VYRALKKVDPEMGISAKGMAVVNSLVHDVLARLAVEAGRLARYNARKTVTARHIQTAVRL 67
Query: 127 VLPGELAKHAVSEGTKAV 144
+LP L K AV GT+AV
Sbjct: 68 LLPLGLDKGAVVAGTEAV 85
>Os01g0152700 Similar to Histone H2B (CaH2B)
Length = 41
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/41 (97%), Positives = 41/41 (100%)
Query: 110 NKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.130 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,205,491
Number of extensions: 55771
Number of successful extensions: 159
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 15
Length of query: 150
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 58
Effective length of database: 12,232,113
Effective search space: 709462554
Effective search space used: 709462554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)