Os08g0490900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histone H2B.2.
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Os08g0490900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histone H2B.2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.38 | 0.475 | 12.3 | -0.585 | 1.57 | 1.27 | -0.945 | -4.3 | -0.25 | 18.8 | 25.24 | 5782 | -- | -- |
| 108.52 | 0.485 | 12.2 | 0.397 | 1.58 | 1.02 | -0.894 | -- | -0.241 | 18.8 | 20.05 | 8695 | -- | -- |
| 104.59 | 0.476 | 12.3 | -0.57 | 1.58 | 1.27 | -- | -4.36 | -0.251 | 18.8 | 25.5 | 5790 | -- | -- |
| 109.61 | 0.488 | 12.2 | 0.466 | 1.57 | 0.964 | -- | -- | -0.177 | 18.7 | 20.62 | 7256 | -- | -- |
| 150.18 | 0.571 | 12.2 | -0.118 | -- | 2.14 | -- | -4.15 | -0.332 | -- | 23.17 | 536 | -- | -- |
| 138.24 | 0.551 | 12.1 | 0.958 | 1.55 | -- | -0.907 | -- | 0.154 | 18.9 | -- | -- | -- | -- |
| 140.35 | 0.555 | 12.1 | 0.975 | 1.55 | -- | -- | -- | 0.152 | 18.8 | -- | -- | -- | -- |
| 160.81 | 0.591 | 12.1 | 0.559 | -- | 1.91 | -- | -- | -0.113 | -- | 23.42 | 542 | -- | -- |
| 113.16 | 0.495 | 12.2 | -- | 1.56 | 1.23 | -- | -- | -0.284 | 18.8 | 18.47 | 7361 | -- | -- |
| 266.04 | 0.762 | 12.1 | 0.941 | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
| 165.38 | 0.602 | 12.1 | -- | 1.54 | -- | -- | -- | 0.0438 | 18.9 | -- | -- | -- | -- |
| 168.16 | 0.604 | 12.1 | -- | -- | 2.04 | -- | -- | -0.219 | -- | 22.96 | 544 | -- | -- |
| 289.39 | 0.794 | 12.1 | -- | -- | -- | -- | -- | 0.0182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.43 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 3 | 101.65 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 5 | 102.02 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 6 | 102.04 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 9 | 102.13 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 27 | 102.63 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 28 | 102.73 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 29 | 102.79 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 8 |
| 32 | 102.85 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 8 |
| 34 | 102.89 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 39 | 102.91 | radiation | 20 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 40 | 102.91 | radiation | 20 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 55 | 102.98 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 64 | 103.07 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 72 | 103.17 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 87 | 103.26 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 106 | 103.42 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 112 | 103.45 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 120 | 103.52 | humidity | 90 | 43200 | > th | dose independent | sin | 14 | NA |
| 126 | 103.54 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 134 | 103.57 | humidity | 90 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 180 | 103.74 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 236 | 103.94 | humidity | 90 | 43200 | > th | dose dependent | sin | 14 | NA |
| 238 | 103.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 239 | 103.96 | humidity | 90 | 43200 | < th | dose independent | sin | 14 | NA |
| 268 | 104.10 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 289 | 104.17 | radiation | 20 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 295 | 104.21 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 315 | 104.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 324 | 104.31 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 367 | 104.49 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 399 | 104.54 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 455 | 104.75 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 459 | 104.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 8 |
| 491 | 104.82 | temperature | 25 | 4320 | > th | dose independent | sin | 5 | NA |
| 539 | 104.90 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 19 |
| 562 | 104.98 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 593 | 105.06 | temperature | 25 | 4320 | < th | dose independent | sin | 5 | NA |
| 601 | 105.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 617 | 105.12 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 631 | 105.16 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 21 |
| 642 | 105.21 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 2 |
| 644 | 105.21 | temperature | 25 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 654 | 105.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 18 |
| 661 | 105.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 21 |
| 721 | 105.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 11 |
| 742 | 105.44 | temperature | 20 | 4320 | > th | dose dependent | sin | 9 | NA |
| 752 | 105.47 | radiation | 10 | 43200 | < th | dose independent | sin | 11 | NA |
| 769 | 105.49 | temperature | 25 | 1440 | < th | dose independent | rect. | 3 | 20 |
| 781 | 105.51 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 794 | 105.54 | radiation | 40 | 43200 | < th | dose independent | sin | 11 | NA |
| 826 | 105.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 16 |
| 855 | 105.65 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 896 | 105.70 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 899 | 105.71 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 2 |