BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0490900 Os08g0490900|J065192G18
(150 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G22880.1 | chr5:7652130-7652567 REVERSE LENGTH=146 179 4e-46
AT5G59910.1 | chr5:24127206-24127658 FORWARD LENGTH=151 178 1e-45
AT3G45980.1 | chr3:16897492-16897944 REVERSE LENGTH=151 178 1e-45
AT1G07790.1 | chr1:2413049-2413495 FORWARD LENGTH=149 177 2e-45
AT2G28720.1 | chr2:12327043-12327498 FORWARD LENGTH=152 177 2e-45
AT3G46030.1 | chr3:16913614-16914051 REVERSE LENGTH=146 177 2e-45
AT2G37470.1 | chr2:15736832-15737248 FORWARD LENGTH=139 173 3e-44
AT3G53650.1 | chr3:19889358-19889774 FORWARD LENGTH=139 172 7e-44
AT5G02570.1 | chr5:576742-577140 REVERSE LENGTH=133 164 2e-41
AT3G09480.1 | chr3:2914890-2915270 REVERSE LENGTH=127 159 7e-40
AT1G08170.1 | chr1:2562941-2563672 REVERSE LENGTH=244 124 2e-29
>AT5G22880.1 | chr5:7652130-7652567 REVERSE LENGTH=146
Length = 145
Score = 179 bits (454), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 90/91 (98%)
Query: 60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 119
VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAGE++KLARYNKKPTITSRE
Sbjct: 55 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSRE 114
Query: 120 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
IQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 115 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
>AT5G59910.1 | chr5:24127206-24127658 FORWARD LENGTH=151
Length = 150
Score = 178 bits (451), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 89/91 (97%)
Query: 60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 119
VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA+KLARYNKKPTITSRE
Sbjct: 60 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 119
Query: 120 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
IQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 120 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150
>AT3G45980.1 | chr3:16897492-16897944 REVERSE LENGTH=151
Length = 150
Score = 178 bits (451), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 89/91 (97%)
Query: 60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 119
VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E++KLARYNKKPTITSRE
Sbjct: 60 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSRE 119
Query: 120 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
IQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 120 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150
>AT1G07790.1 | chr1:2413049-2413495 FORWARD LENGTH=149
Length = 148
Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 89/91 (97%)
Query: 60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 119
VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E++KLARYNKKPTITSRE
Sbjct: 58 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 117
Query: 120 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
IQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 118 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
>AT2G28720.1 | chr2:12327043-12327498 FORWARD LENGTH=152
Length = 151
Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/90 (95%), Positives = 88/90 (97%)
Query: 61 ETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREI 120
ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA+KLARYNKKPTITSREI
Sbjct: 62 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 121
Query: 121 QTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
QT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 122 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151
>AT3G46030.1 | chr3:16913614-16914051 REVERSE LENGTH=146
Length = 145
Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 89/91 (97%)
Query: 60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 119
VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E++KLARYNKKPTITSRE
Sbjct: 55 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSRE 114
Query: 120 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
IQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 115 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
>AT2G37470.1 | chr2:15736832-15737248 FORWARD LENGTH=139
Length = 138
Score = 173 bits (438), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/90 (92%), Positives = 87/90 (96%)
Query: 60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 119
VETYKIYIFKVLKQVHPD+GIS KAM IMNSFINDIFEKLA E++KLARYNKKPTITSRE
Sbjct: 49 VETYKIYIFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 108
Query: 120 IQTSVRLVLPGELAKHAVSEGTKAVTKFTS 149
IQT+VRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct: 109 IQTAVRLVLPGELAKHAVSEGTKAVTKFTS 138
>AT3G53650.1 | chr3:19889358-19889774 FORWARD LENGTH=139
Length = 138
Score = 172 bits (435), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 82/91 (90%), Positives = 88/91 (96%)
Query: 60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 119
+ETYKIYIFKVLKQVHPDIGIS KAM IMNSFINDIFEKLA E+++LARYNKKPTITSRE
Sbjct: 48 IETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 107
Query: 120 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
IQT+VRLVLPGEL+KHAVSEGTKAVTKFTSS
Sbjct: 108 IQTAVRLVLPGELSKHAVSEGTKAVTKFTSS 138
>AT5G02570.1 | chr5:576742-577140 REVERSE LENGTH=133
Length = 132
Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/86 (91%), Positives = 83/86 (96%)
Query: 65 IYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSV 124
IYIFKVLKQVHPDIGIS KAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+V
Sbjct: 47 IYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 106
Query: 125 RLVLPGELAKHAVSEGTKAVTKFTSS 150
RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 107 RLVLPGELAKHAVSEGTKAVTKFTSS 132
>AT3G09480.1 | chr3:2914890-2915270 REVERSE LENGTH=127
Length = 126
Score = 159 bits (401), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 76/86 (88%), Positives = 82/86 (95%)
Query: 65 IYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSV 124
IY+FKVLKQVHPDIGIS KAM IMNSFIND FEK+A E+++LARYNKKPTITSREIQT+V
Sbjct: 41 IYLFKVLKQVHPDIGISGKAMGIMNSFINDTFEKIALESSRLARYNKKPTITSREIQTAV 100
Query: 125 RLVLPGELAKHAVSEGTKAVTKFTSS 150
RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 101 RLVLPGELAKHAVSEGTKAVTKFTSS 126
>AT1G08170.1 | chr1:2562941-2563672 REVERSE LENGTH=244
Length = 243
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 77/87 (88%)
Query: 61 ETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREI 120
+ Y+ Y++KV+KQVHPD+GI+SKAM+++N F+ D+FE++A EAA+L+ Y K+ T++SREI
Sbjct: 149 DEYRRYVYKVMKQVHPDLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREI 208
Query: 121 QTSVRLVLPGELAKHAVSEGTKAVTKF 147
+ +VRLVLPGEL++HAV+EG+KAV+ F
Sbjct: 209 EAAVRLVLPGELSRHAVAEGSKAVSNF 235
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.130 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,510,829
Number of extensions: 41287
Number of successful extensions: 136
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 11
Length of query: 150
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 60
Effective length of database: 8,639,129
Effective search space: 518347740
Effective search space used: 518347740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)