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Os01g0149600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Histone H2B.1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0187) R2 : 0.56
β1 : 1.16 (0.0684) R2dD : 0.286 R2D : 0.193
β2 : 0.796 (0.0484) R2dC : 0.262 R2C : 0.215
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.386 (0.0399) R2dN8 : 0.121 R2N8 : 0.0226
σ : 0.351
deviance : 56.2
__
_____
C
peak time of C : 16.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.09 0.319 12.4 1.11 0.859 -0.587 -0.0852 -0.768 0.376 19.8 19.27 10 -- --
47.72 0.322 12.4 1.12 0.968 -0.723 -0.803 -- 0.375 20.5 14.17 6 -- --
46.04 0.316 12.4 1.12 0.857 -0.588 -- -0.788 0.383 19.8 19.93 7 -- --
49.39 0.327 12.4 1.14 0.878 -0.617 -- -- 0.385 19.9 19.33 5 -- --
56.52 0.35 12.4 1.12 -- -0.744 -- -0.615 0.206 -- 0.3572 582 -- --
55.64 0.35 12.4 1.15 0.789 -- 0.501 -- 0.384 16.7 -- -- -- --
56.2 0.351 12.4 1.16 0.796 -- -- -- 0.386 16.9 -- -- -- --
54.55 0.344 12.4 1.08 -- -0.893 -- -- 0.349 -- 0.36 623 -- --
83.53 0.426 12.4 -- 0.853 -0.626 -- -- 0.261 20 21.51 6 -- --
89.6 0.442 12.4 1.13 -- -- -- -- 0.366 -- -- -- -- --
91.41 0.447 12.4 -- 0.776 -- -- -- 0.257 17 -- -- -- --
84.54 0.428 12.4 -- -- -0.971 -- -- 0.237 -- 0.009855 654 -- --
123.07 0.518 12.4 -- -- -- -- -- 0.241 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.95 radiation 30.0 30 < th dose dependent rect. 13 18
3 44.98 temperature 15.0 270 > th dose independent rect. 1 16
6 45.03 radiation 1.0 90 > th dose independent sin 1 NA
12 45.22 radiation 20.0 30 < th dose independent rect. 12 18
16 45.32 temperature 15.0 270 > th dose independent rect. 1 14
19 45.38 radiation 20.0 10 < th dose dependent rect. 12 21
21 45.42 radiation 40.0 90 < th dose dependent rect. 15 15
41 45.74 humidity 50.0 270 > th dose independent rect. 1 16
43 45.75 precipitation 0.1 270 < th dose independent rect. 6 18
44 45.75 precipitation 0.1 270 < th dose dependent rect. 6 18
47 45.82 radiation 10.0 14400 < th dose dependent rect. 19 9
50 45.83 radiation 20.0 10 < th dose dependent rect. 10 21
53 45.85 precipitation 0.1 270 < th dose independent rect. 17 8
54 45.85 wind 7.0 270 < th dose independent rect. 15 10
55 45.85 precipitation 0.1 270 < th dose dependent rect. 17 8
56 45.88 wind 7.0 270 < th dose independent rect. 17 8
59 45.92 temperature 15.0 1440 > th dose independent rect. 7 8
60 45.92 radiation 20.0 10 < th dose dependent rect. 10 23
65 45.95 radiation 20.0 10 < th dose dependent rect. 8 23
68 45.97 radiation 20.0 90 < th dose independent rect. 15 15
69 45.97 radiation 20.0 10 < th dose dependent rect. 1 23
73 45.99 radiation 1.0 270 < th dose dependent rect. 23 21
75 46.01 temperature 15.0 1440 > th dose independent rect. 7 10
76 46.02 wind 9.0 270 < th dose independent rect. 1 16
80 46.03 atmosphere 995.0 270 > th dose independent rect. 1 16
81 46.05 precipitation 0.1 270 < th dose independent rect. 5 20
83 46.05 precipitation 0.1 270 < th dose dependent rect. 5 20
84 46.06 wind 9.0 270 < th dose independent rect. 24 6
85 46.06 temperature 10.0 270 > th dose independent rect. 24 6
86 46.06 temperature 30.0 270 < th dose independent rect. 24 6
87 46.06 humidity 50.0 270 > th dose independent rect. 24 6
90 46.06 atmosphere 995.0 270 > th dose independent rect. 24 6
91 46.06 atmosphere 1015.0 270 < th dose independent rect. 24 6
92 46.06 radiation 20.0 270 < th dose independent rect. 24 6
95 46.06 radiation 10.0 270 < th dose independent rect. 17 8
97 46.06 temperature 10.0 270 > th dose independent rect. 6 18
103 46.07 humidity 50.0 90 > th dose independent rect. 15 15
108 46.09 radiation 1.0 90 > th dose independent rect. 6 9
109 46.09 radiation 1.0 10 > th dose independent rect. 6 10
115 46.11 radiation 40.0 270 < th dose dependent rect. 24 6
124 46.15 temperature 10.0 270 > th dose dependent rect. 17 8
126 46.16 precipitation 0.1 270 < th dose independent rect. 24 6
127 46.16 precipitation 0.1 270 < th dose dependent rect. 24 6
134 46.19 temperature 10.0 270 > th dose independent rect. 17 8
139 46.19 atmosphere 1015.0 270 < th dose independent rect. 1 16
144 46.21 temperature 15.0 90 > th dose independent rect. 3 15
145 46.21 radiation 20.0 10 < th dose dependent no NA NA
146 46.22 wind 1.0 270 > th dose independent rect. 1 4
147 46.22 wind 1.0 270 > th dose independent rect. 24 6
152 46.23 radiation 20.0 10 < th dose dependent rect. 15 23
165 46.31 wind 5.0 30 < th dose independent rect. 15 12
169 46.32 humidity 50.0 10 > th dose dependent rect. 14 17
175 46.35 precipitation 0.1 270 < th dose independent rect. 1 16
176 46.35 radiation 40.0 270 < th dose independent rect. 6 19
177 46.35 precipitation 0.1 270 < th dose dependent rect. 1 16
183 46.36 radiation 1.0 270 < th dose dependent rect. 1 4
184 46.36 radiation 40.0 270 < th dose dependent rect. 17 8
190 46.39 wind 9.0 270 < th dose independent rect. 1 4
191 46.39 temperature 10.0 270 > th dose independent rect. 1 4
193 46.39 temperature 30.0 270 < th dose independent rect. 1 4
194 46.39 humidity 50.0 270 > th dose independent rect. 1 4
197 46.39 atmosphere 995.0 270 > th dose independent rect. 1 4
198 46.39 atmosphere 1010.0 270 < th dose independent rect. 1 4
200 46.39 radiation 20.0 270 < th dose independent rect. 1 4
204 46.39 wind 9.0 270 < th dose independent rect. 6 18
205 46.39 temperature 10.0 270 > th dose independent rect. 5 20
206 46.39 radiation 20.0 270 < th dose dependent rect. 1 4
211 46.40 radiation 1.0 270 < th dose independent rect. 1 4
219 46.41 atmosphere 995.0 270 > th dose independent rect. 17 8
224 46.42 humidity 50.0 10 > th dose dependent rect. 16 15
231 46.45 atmosphere 995.0 270 > th dose dependent rect. 24 6
234 46.46 humidity 50.0 270 > th dose independent rect. 17 8
259 46.49 precipitation 0.1 90 < th dose independent rect. 6 9
261 46.49 precipitation 0.1 90 < th dose dependent rect. 6 9
264 46.51 precipitation 0.1 270 < th dose independent rect. 1 4
265 46.51 precipitation 0.1 270 < th dose dependent rect. 1 4
284 46.56 radiation 20.0 10 < th dose dependent sin 5 NA
289 46.58 wind 1.0 270 > th dose independent rect. 17 8
290 46.58 atmosphere 995.0 90 > th dose independent rect. 15 15
294 46.58 radiation 40.0 270 < th dose dependent rect. 6 19
304 46.62 temperature 10.0 270 > th dose independent rect. 5 9
305 46.62 atmosphere 995.0 270 > th dose independent rect. 5 9
306 46.62 atmosphere 1015.0 270 < th dose independent rect. 5 9
307 46.62 temperature 10.0 270 > th dose independent rect. 14 15
323 46.65 humidity 50.0 90 > th dose dependent rect. 15 15
367 46.70 radiation 1.0 270 < th dose independent rect. 23 21
370 46.71 humidity 50.0 90 > th dose independent rect. 3 15
376 46.72 radiation 20.0 10 < th dose dependent rect. 21 23
378 46.73 wind 9.0 270 < th dose dependent rect. 15 10
393 46.77 wind 9.0 270 < th dose independent rect. 5 9
401 46.78 radiation 10.0 14400 < th dose dependent rect. 21 7
408 46.79 wind 9.0 270 < th dose independent rect. 14 15
415 46.81 temperature 30.0 90 < th dose independent rect. 15 15
416 46.82 wind 1.0 270 > th dose independent rect. 6 18
435 46.85 humidity 50.0 270 > th dose dependent rect. 24 6
442 46.87 temperature 20.0 90 > th dose independent rect. 6 9
448 46.88 temperature 25.0 90 < th dose independent rect. 12 19
476 46.93 wind 1.0 270 > th dose independent rect. 1 16
480 46.93 radiation 1.0 270 > th dose independent rect. 17 21
481 46.93 wind 9.0 270 < th dose dependent rect. 17 8
487 46.93 radiation 20.0 10 < th dose dependent rect. 3 23
514 46.98 humidity 50.0 270 > th dose dependent rect. 1 4
541 47.02 radiation 10.0 90 < th dose dependent sin 5 NA
542 47.02 wind 9.0 90 < th dose dependent rect. 6 9
564 47.05 radiation 20.0 10 < th dose dependent rect. 19 23
578 47.08 radiation 10.0 10 > th dose independent sin 2 NA
581 47.08 radiation 40.0 270 < th dose independent rect. 9 15
587 47.09 radiation 40.0 270 < th dose independent rect. 5 8
614 47.12 temperature 30.0 270 < th dose independent rect. 18 7
623 47.13 wind 5.0 30 < th dose independent rect. 18 9
643 47.15 atmosphere 995.0 270 > th dose independent rect. 6 18
659 47.18 atmosphere 1015.0 90 < th dose independent rect. 15 15
664 47.18 radiation 10.0 10 > th dose independent rect. 15 23
674 47.20 radiation 10.0 10 < th dose independent rect. 1 23
683 47.21 radiation 10.0 270 < th dose independent rect. 6 19
689 47.22 wind 9.0 90 < th dose independent rect. 3 15
709 47.24 humidity 50.0 10 > th dose independent rect. 16 15
712 47.25 humidity 60.0 10 > th dose independent rect. 18 9
722 47.26 temperature 30.0 270 < th dose independent rect. 1 16
758 47.30 wind 9.0 10 < th dose independent rect. 3 15
759 47.30 temperature 10.0 10 > th dose dependent rect. 6 21
761 47.31 humidity 90.0 270 < th dose independent rect. 17 7
764 47.31 radiation 1.0 30 < th dose independent rect. 18 9
770 47.31 radiation 1.0 30 < th dose dependent rect. 18 9
782 47.32 atmosphere 1015.0 270 < th dose independent rect. 13 16
784 47.32 temperature 30.0 270 < th dose dependent rect. 1 4
803 47.33 radiation 10.0 90 < th dose dependent rect. 3 14
807 47.34 atmosphere 995.0 30 > th dose independent rect. 3 15
821 47.35 wind 1.0 270 > th dose independent rect. 5 20
822 47.35 radiation 10.0 10 < th dose independent rect. 10 22
834 47.36 atmosphere 995.0 10 > th dose independent rect. 14 17
835 47.36 radiation 20.0 10 < th dose independent rect. 10 20
840 47.36 radiation 20.0 10 < th dose dependent rect. 23 23
862 47.38 radiation 10.0 10 < th dose dependent sin 1 NA
887 47.41 temperature 30.0 10 < th dose independent rect. 18 9
897 47.42 radiation 10.0 10 > th dose independent rect. 9 23
910 47.43 temperature 10.0 10 > th dose dependent rect. 7 18
924 47.44 radiation 10.0 10 < th dose dependent rect. 3 15
933 47.45 temperature 10.0 90 > th dose dependent rect. 6 19
958 47.47 temperature 15.0 30 > th dose independent rect. 18 9
965 47.47 wind 9.0 270 < th dose dependent rect. 24 6
982 47.48 atmosphere 1015.0 90 < th dose independent rect. 3 15
994 47.49 precipitation 0.1 10 < th dose independent rect. 6 8
999 47.49 precipitation 0.1 10 < th dose dependent rect. 6 8