Os01g0153100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histone H2B-3 (Fragment).
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Os01g0153100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histone H2B-3 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.33 | 0.388 | 15.1 | 1.12 | 0.797 | 0.688 | -0.616 | -0.77 | 0.38 | 19.1 | 21.3 | 985 | -- | -- |
| 69.37 | 0.388 | 15.1 | 1.18 | 0.844 | 0.814 | -0.795 | -- | 0.374 | 19.3 | 21.41 | 2611 | -- | -- |
| 69.04 | 0.387 | 15.2 | 1.09 | 0.77 | 0.654 | -- | -1 | 0.363 | 19.1 | 21.4 | 895 | -- | -- |
| 71.05 | 0.393 | 15.1 | 1.2 | 0.845 | 0.811 | -- | -- | 0.374 | 19.2 | 21.44 | 2616 | -- | -- |
| 98.03 | 0.461 | 15.1 | 1.05 | -- | 0.738 | -- | -1.01 | 0.31 | -- | 21.9 | 778 | -- | -- |
| 87.33 | 0.438 | 15.1 | 1.6 | 0.845 | -- | -0.776 | -- | 0.627 | 19.6 | -- | -- | -- | -- |
| 89 | 0.442 | 15.1 | 1.61 | 0.846 | -- | -- | -- | 0.626 | 19.5 | -- | -- | -- | -- |
| 101.62 | 0.47 | 15.1 | 1.32 | -- | 0.809 | -- | -- | 0.364 | -- | 21.7 | 807 | -- | -- |
| 78.59 | 0.413 | 15.2 | -- | 0.845 | 1.51 | -- | -- | 0.163 | 19.4 | 16.42 | 47520 | -- | -- |
| 127.29 | 0.527 | 15.1 | 1.6 | -- | -- | -- | -- | 0.613 | -- | -- | -- | -- | -- |
| 157.72 | 0.587 | 15.1 | -- | 0.832 | -- | -- | -- | 0.446 | 19.6 | -- | -- | -- | -- |
| 116.62 | 0.503 | 15.2 | -- | -- | 1.44 | -- | -- | 0.122 | -- | 18.48 | 28067 | -- | -- |
| 194.99 | 0.652 | 15.1 | -- | -- | -- | -- | -- | 0.435 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.58 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 2 | 68.12 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 17 | 68.61 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 19 | 68.72 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 20 |
| 24 | 68.77 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 41 | 68.97 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 55 | 69.01 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 61 | 69.15 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 67 | 69.34 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 71 | 69.50 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 75 | 69.54 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 80 | 69.56 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 6 | 5 |
| 81 | 69.58 | wind | 7.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 83 | 69.59 | wind | 7.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 86 | 69.66 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 87 | 69.66 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 89 | 69.67 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 103 | 69.67 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 104 | 69.67 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 108 | 69.69 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 109 | 69.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 112 | 69.72 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 129 | 69.75 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 132 | 69.75 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 135 | 69.75 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 140 | 69.79 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 21 | 14 |
| 169 | 69.84 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 199 | 69.89 | radiation | 20.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 251 | 69.95 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 253 | 69.96 | radiation | 20.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 258 | 69.97 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 20 |
| 259 | 69.97 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 328 | 70.03 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 371 | 70.10 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 373 | 70.10 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 419 | 70.16 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 427 | 70.17 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 567 | 70.28 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 22 | 18 |
| 570 | 70.28 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 576 | 70.29 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 658 | 70.33 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 755 | 70.38 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 12 | 22 |
| 815 | 70.45 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 816 | 70.45 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 819 | 70.45 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 824 | 70.45 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 7 |
| 829 | 70.46 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 13 | NA |
| 840 | 70.47 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 953 | 70.54 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 984 | 70.55 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |