BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0153100 Os01g0153100|J080013I19
(153 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0490900 Similar to Histone H2B.2 160 4e-40
Os01g0839500 Histone H2B family protein 159 6e-40
Os01g0153100 Similar to Histone H2B-3 (Fragment) 159 9e-40
Os01g0152300 Similar to Histone H2B.1 159 1e-39
Os01g0149600 Similar to Histone H2B.1 159 1e-39
Os01g0152900 Similar to Histone H2B.1 158 1e-39
Os01g0153300 Similar to Histone H2B.1 157 4e-39
Os05g0574300 Similar to Histone H2B.2 156 5e-39
AK108119 133 5e-32
Os05g0460500 Similar to Histone H2B.2 131 2e-31
AK106505 97 6e-21
Os09g0570850 Histone H2B family protein 96 7e-21
Os01g0152700 Similar to Histone H2B (CaH2B) 83 6e-17
AK108978 78 3e-15
Os08g0490800 73 7e-14
>Os08g0490900 Similar to Histone H2B.2
Length = 150
Score = 160 bits (405), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 80/91 (87%)
Query: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSRE 122
VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIF RYNKKPTITSRE
Sbjct: 60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSRE 119
Query: 123 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
IQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 120 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
>Os01g0839500 Histone H2B family protein
Length = 139
Score = 159 bits (403), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 80/91 (87%)
Query: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSRE 122
VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIF RYNKKPTITSRE
Sbjct: 49 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSRE 108
Query: 123 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
IQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 109 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139
>Os01g0153100 Similar to Histone H2B-3 (Fragment)
Length = 153
Score = 159 bits (401), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 80/91 (87%)
Query: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSRE 122
VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIF RYNKKPTITSRE
Sbjct: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSRE 122
Query: 123 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 123 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
>Os01g0152300 Similar to Histone H2B.1
Length = 153
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 80/91 (87%)
Query: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSRE 122
VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIF RYNKKPTITSRE
Sbjct: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSRE 122
Query: 123 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
IQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 123 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
>Os01g0149600 Similar to Histone H2B.1
Length = 153
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 80/91 (87%)
Query: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSRE 122
VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIF RYNKKPTITSRE
Sbjct: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSRE 122
Query: 123 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
IQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 123 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
>Os01g0152900 Similar to Histone H2B.1
Length = 153
Score = 158 bits (399), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 80/91 (87%)
Query: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSRE 122
VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIF RYNKKPTITSRE
Sbjct: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSRE 122
Query: 123 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
IQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 123 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
>Os01g0153300 Similar to Histone H2B.1
Length = 155
Score = 157 bits (396), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 80/91 (87%)
Query: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSRE 122
VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIF RYNKKPTITSRE
Sbjct: 65 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSRE 124
Query: 123 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
IQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 125 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 155
>Os05g0574300 Similar to Histone H2B.2
Length = 152
Score = 156 bits (395), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 80/91 (87%)
Query: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSRE 122
VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIF RYNKKPTITSRE
Sbjct: 62 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSRE 121
Query: 123 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
IQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 122 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 152
>AK108119
Length = 142
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 73/90 (81%)
Query: 64 ETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSREI 123
ETY YI++VLKQVHPD GIS+KAM+I+NSF+ DIF YNKK TI+SREI
Sbjct: 52 ETYSTYIYRVLKQVHPDTGISNKAMAILNSFVQDIFERIATEASKLASYNKKSTISSREI 111
Query: 124 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
QTAVRL+LPGEL+KHA+SEGTK+VTKF+SS
Sbjct: 112 QTAVRLILPGELSKHAISEGTKSVTKFSSS 141
>Os05g0460500 Similar to Histone H2B.2
Length = 118
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/77 (83%), Positives = 66/77 (85%)
Query: 77 VHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSREIQTAVRLVLPGELA 136
VHPDIGISSKAMSIMNSF+NDIF RYNKKPTITSREIQT+VRLVLPGELA
Sbjct: 42 VHPDIGISSKAMSIMNSFVNDIFEKLEQEAARLARYNKKPTITSREIQTSVRLVLPGELA 101
Query: 137 KHAVSEGTKAVTKFTSS 153
KHAVSEGTKAVTKFTSS
Sbjct: 102 KHAVSEGTKAVTKFTSS 118
>AK106505
Length = 194
Score = 96.7 bits (239), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 62/87 (71%)
Query: 66 YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSREIQT 125
YK Y+++VLKQVHPD+G S++ M +++ + D+F + + + T+TSRE+Q+
Sbjct: 108 YKRYVWRVLKQVHPDLGASAQTMDVLDMMMADMFERLADEASRLSKLSGRLTLTSREVQS 167
Query: 126 AVRLVLPGELAKHAVSEGTKAVTKFTS 152
AVRLVLP +LA HA+SEGTKA++ + S
Sbjct: 168 AVRLVLPADLANHAISEGTKAISNYLS 194
>Os09g0570850 Histone H2B family protein
Length = 194
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 62/87 (71%)
Query: 66 YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSREIQT 125
YK Y+++VLKQVHPD+G S++ M +++ + D+F + + + T+TSRE+Q+
Sbjct: 108 YKRYVWRVLKQVHPDLGASAQTMDVLDMMMADMFERLADEASRLSKLSGRLTLTSREVQS 167
Query: 126 AVRLVLPGELAKHAVSEGTKAVTKFTS 152
AVRLVLP +LA HA+SEGTKA++ + S
Sbjct: 168 AVRLVLPADLANHAISEGTKAISNYLS 194
>Os01g0152700 Similar to Histone H2B (CaH2B)
Length = 41
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 113 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
>AK108978
Length = 320
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%)
Query: 70 IFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSREIQTAVRL 129
+++ LK+V P++GIS+K M+++NS ++D+ RYN + T+T+R IQTAVRL
Sbjct: 8 VYRALKKVDPEMGISAKGMAVVNSLVHDVLARLAVEAGRLARYNARKTVTARHIQTAVRL 67
Query: 130 VLPGELAKHAVSEGTKAVTKFTS 152
+LP L K AV GT+AV S
Sbjct: 68 LLPLGLDKGAVVAGTEAVEAHRS 90
>Os08g0490800
Length = 79
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 111 RYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVT 148
RYNKKPTITSREIQT+VRLVL GELAKHAVSEG KAVT
Sbjct: 14 RYNKKPTITSREIQTSVRLVLLGELAKHAVSEGAKAVT 51
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,900,841
Number of extensions: 36901
Number of successful extensions: 76
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 15
Length of query: 153
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 61
Effective length of database: 12,232,113
Effective search space: 746158893
Effective search space used: 746158893
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)