Os05g0574300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histone H2B.2.
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Os05g0574300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histone H2B.2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.72 | 0.559 | 14 | 1.41 | 0.435 | 0.805 | -1.25 | -0.821 | 0.288 | 20.7 | 25.2 | 89 | -- | -- |
| 144.06 | 0.559 | 14 | 1.63 | 0.478 | 0.759 | -1.15 | -- | 0.33 | 20.3 | 25.2 | 80 | -- | -- |
| 146.71 | 0.564 | 14 | 1.48 | 0.454 | 0.771 | -- | -0.748 | 0.31 | 20.1 | 25.26 | 90 | -- | -- |
| 148.64 | 0.568 | 13.9 | 1.7 | 0.477 | 0.726 | -- | -- | 0.383 | 20 | 25.24 | 82 | -- | -- |
| 156.92 | 0.583 | 14 | 1.44 | -- | 0.854 | -- | -0.86 | 0.274 | -- | 25.3 | 111 | -- | -- |
| 178.95 | 0.627 | 13.9 | 1.89 | 0.858 | -- | -0.734 | -- | 0.717 | 17.9 | -- | -- | -- | -- |
| 180.06 | 0.628 | 13.9 | 1.9 | 0.856 | -- | -- | -- | 0.715 | 17.7 | -- | -- | -- | -- |
| 159.65 | 0.588 | 13.9 | 1.67 | -- | 0.815 | -- | -- | 0.342 | -- | 25.27 | 103 | -- | -- |
| 222.92 | 0.695 | 14 | -- | 0.508 | 0.896 | -- | -- | 0.216 | 21 | 25.3 | 83 | -- | -- |
| 218.1 | 0.69 | 13.9 | 1.87 | -- | -- | -- | -- | 0.694 | -- | -- | -- | -- | -- |
| 275.16 | 0.776 | 13.9 | -- | 0.826 | -- | -- | -- | 0.503 | 17.8 | -- | -- | -- | -- |
| 231.38 | 0.708 | 14 | -- | -- | 0.941 | -- | -- | 0.109 | -- | 25.36 | 107 | -- | -- |
| 310.57 | 0.823 | 13.9 | -- | -- | -- | -- | -- | 0.486 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 8 | 136.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 12 | 137.52 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 19 |
| 16 | 138.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 19 | 139.16 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 24 | 139.33 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 32 | 139.62 | temperature | 20 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 40 | 139.82 | temperature | 20 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 43 | 139.89 | radiation | 20 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 49 | 139.94 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 17 |
| 53 | 140.02 | radiation | 40 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 55 | 140.06 | radiation | 1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 56 | 140.07 | radiation | 20 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 60 | 140.08 | radiation | 20 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 62 | 140.11 | radiation | 20 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 63 | 140.11 | radiation | 20 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 70 | 140.14 | radiation | 40 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 74 | 140.16 | radiation | 40 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 84 | 140.20 | radiation | 40 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 111 | 140.29 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 128 | 140.32 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 20 |
| 138 | 140.35 | radiation | 20 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 139 | 140.35 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 20 |
| 176 | 140.55 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 7 |
| 197 | 140.58 | radiation | 20 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 203 | 140.59 | radiation | 20 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 224 | 140.76 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 7 |
| 240 | 141.00 | radiation | 1 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 258 | 141.15 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 360 | 141.43 | temperature | 25 | 720 | > th | dose independent | sin | 23 | NA |
| 361 | 141.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 22 | 7 |
| 422 | 141.60 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 19 |
| 423 | 141.60 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 20 |
| 429 | 141.62 | radiation | 20 | 43200 | < th | dose independent | sin | 12 | NA |
| 437 | 141.66 | humidity | 70 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 441 | 141.68 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 466 | 141.75 | radiation | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 554 | 141.92 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 561 | 141.95 | radiation | 40 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 577 | 141.97 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 13 |
| 596 | 142.00 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 608 | 142.01 | radiation | 30 | 43200 | < th | dose dependent | sin | 11 | NA |
| 613 | 142.03 | radiation | 40 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 623 | 142.05 | radiation | 1 | 43200 | > th | dose dependent | sin | 11 | NA |
| 668 | 142.10 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 723 | 142.18 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 817 | 142.30 | radiation | 40 | 43200 | < th | dose independent | sin | 16 | NA |
| 829 | 142.32 | radiation | 20 | 43200 | > th | dose dependent | rect. | 13 | 20 |
| 934 | 142.49 | radiation | 10 | 43200 | < th | dose independent | no | NA | NA |
| 936 | 142.49 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 19 |
| 938 | 142.49 | radiation | 10 | 43200 | < th | dose independent | rect. | 24 | 19 |
| 943 | 142.49 | radiation | 10 | 43200 | < th | dose independent | rect. | 2 | 21 |
| 973 | 142.50 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 974 | 142.50 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 15 |