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Os01g0152700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Histone H2B (CaH2B).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.1 (0.0173) R2 : 0.172
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.355 (0.0364) R2dN8 : 0.223 R2N8 : 0.172
σ : 0.326
deviance : 48.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.51 0.242 14.1 -0.0119 0.442 0.64 -0.402 0.214 0.221 19.5 21.01 3181 -- --
26.3 0.239 14.1 0.00459 0.451 0.555 -0.351 -- 0.211 19.5 21.7 3044 -- --
26.84 0.241 14.1 0.00399 0.449 0.593 -- 0.119 0.22 19.3 21.3 3071 -- --
26.67 0.241 14.2 -0.00149 0.45 0.564 -- -- 0.204 19.4 21.75 3044 -- --
36.91 0.283 14.1 -0.056 -- 0.574 -- -0.0871 0.18 -- 21.7 3439 -- --
35.34 0.279 14.1 0.291 0.444 -- -0.381 -- 0.395 19.7 -- -- -- --
35.73 0.28 14.1 0.301 0.446 -- -- -- 0.394 19.5 -- -- -- --
36.91 0.283 14.1 0.0692 -- 0.525 -- -- 0.209 -- 22.08 2216 -- --
26.67 0.241 14.2 -- 0.45 0.564 -- -- 0.204 19.4 21.75 3044 -- --
46.37 0.318 14.1 0.295 -- -- -- -- 0.388 -- -- -- -- --
38.13 0.289 14.1 -- 0.443 -- -- -- 0.361 19.6 -- -- -- --
37 0.283 14.1 -- -- 0.552 -- -- 0.197 -- 21.92 2268 -- --
48.66 0.326 14.1 -- -- -- -- -- 0.355 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.69 temperature 20.0 4320 > th dose independent rect. 21 2
2 26.74 temperature 20.0 4320 < th dose independent rect. 21 2
3 26.87 temperature 20.0 1440 < th dose independent rect. 4 1
4 26.89 temperature 20.0 1440 > th dose independent rect. 4 1
8 26.96 temperature 20.0 1440 > th dose dependent rect. 1 1
15 27.10 temperature 20.0 10 > th dose dependent rect. 7 22
39 27.36 temperature 30.0 90 < th dose dependent rect. 24 23
41 27.37 temperature 30.0 270 < th dose dependent rect. 23 21
46 27.39 temperature 10.0 270 > th dose dependent rect. 4 22
77 27.52 temperature 20.0 4320 < th dose independent rect. 21 9
79 27.52 temperature 20.0 4320 > th dose independent rect. 20 11
93 27.55 temperature 20.0 4320 > th dose independent rect. 18 13
97 27.55 temperature 10.0 90 > th dose dependent rect. 6 23
106 27.56 temperature 25.0 4320 < th dose dependent rect. 21 1
117 27.59 radiation 40.0 43200 < th dose independent rect. 17 15
120 27.59 temperature 20.0 10 > th dose dependent rect. 7 19
135 27.62 radiation 40.0 43200 < th dose independent rect. 3 5
150 27.64 radiation 40.0 43200 < th dose independent rect. 20 12
162 27.65 radiation 40.0 43200 < th dose independent rect. 22 10
191 27.70 wind 7.0 43200 > th dose independent rect. 11 1
199 27.71 temperature 20.0 4320 > th dose independent sin 12 NA
201 27.71 wind 7.0 43200 < th dose independent rect. 11 1
217 27.73 temperature 25.0 1440 < th dose dependent rect. 18 11
222 27.74 temperature 20.0 4320 < th dose independent sin 12 NA
229 27.75 precipitation 0.1 43200 > th dose independent rect. 9 1
233 27.75 precipitation 0.1 43200 > th dose dependent rect. 9 1
237 27.75 temperature 30.0 10 < th dose dependent rect. 24 22
238 27.75 temperature 20.0 90 > th dose dependent rect. 17 23
240 27.76 precipitation 0.1 43200 < th dose independent rect. 9 1
246 27.76 temperature 25.0 1440 < th dose dependent rect. 2 1
247 27.76 precipitation 0.1 43200 < th dose dependent rect. 9 1
249 27.76 temperature 25.0 1440 < th dose dependent rect. 1 4
295 27.81 radiation 1.0 43200 < th dose independent rect. 3 2
357 27.84 temperature 20.0 10 > th dose dependent rect. 7 17
360 27.85 humidity 80.0 43200 > th dose independent rect. 12 2
408 27.87 radiation 40.0 43200 < th dose dependent rect. 3 2
416 27.87 temperature 25.0 4320 < th dose dependent rect. 17 6
424 27.88 temperature 20.0 4320 < th dose independent rect. 1 6
458 27.90 radiation 10.0 43200 < th dose independent rect. 18 5
461 27.90 radiation 1.0 43200 < th dose independent rect. 20 9
489 27.91 wind 7.0 43200 > th dose dependent rect. 11 1
506 27.92 radiation 10.0 43200 < th dose independent rect. 18 3
512 27.92 temperature 20.0 1440 > th dose dependent sin 11 NA
527 27.93 radiation 10.0 43200 < th dose independent rect. 18 1
553 27.94 radiation 1.0 43200 > th dose independent rect. 4 1
562 27.94 radiation 1.0 43200 < th dose independent rect. 22 7
572 27.94 temperature 25.0 1440 < th dose dependent sin 13 NA
576 27.94 radiation 1.0 43200 > th dose dependent rect. 4 1
598 27.95 temperature 25.0 4320 < th dose independent rect. 12 1
625 27.95 temperature 20.0 720 > th dose dependent rect. 21 19
670 27.98 temperature 25.0 1440 < th dose independent rect. 16 4
681 27.98 humidity 80.0 43200 < th dose dependent rect. 8 1
692 27.98 temperature 10.0 720 > th dose dependent rect. 12 21
707 27.99 radiation 1.0 4320 < th dose dependent rect. 3 2
770 28.02 temperature 25.0 4320 < th dose independent rect. 16 2
826 28.04 radiation 10.0 43200 < th dose independent rect. 12 2
840 28.04 humidity 80.0 43200 > th dose dependent rect. 13 1
876 28.05 temperature 20.0 720 > th dose dependent rect. 12 22
878 28.06 temperature 15.0 43200 > th dose independent rect. 22 1
957 28.09 radiation 10.0 43200 > th dose dependent rect. 6 2
983 28.10 temperature 15.0 43200 < th dose independent rect. 22 1