BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0152700 Os01g0152700|AK059159
(41 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0153100 Similar to Histone H2B-3 (Fragment) 83 4e-17
Os01g0152700 Similar to Histone H2B (CaH2B) 82 8e-17
Os01g0839500 Histone H2B family protein 82 9e-17
Os05g0460500 Similar to Histone H2B.2 82 1e-16
Os08g0490900 Similar to Histone H2B.2 82 1e-16
Os01g0152900 Similar to Histone H2B.1 80 2e-16
Os01g0152300 Similar to Histone H2B.1 80 2e-16
Os05g0574300 Similar to Histone H2B.2 80 3e-16
Os01g0153300 Similar to Histone H2B.1 80 3e-16
Os01g0149600 Similar to Histone H2B.1 80 3e-16
AK108119 74 3e-14
Os08g0490800 67 2e-12
>Os01g0153100 Similar to Histone H2B-3 (Fragment)
Length = 153
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 113 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
>Os01g0152700 Similar to Histone H2B (CaH2B)
Length = 41
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
>Os01g0839500 Histone H2B family protein
Length = 139
Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/41 (97%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 99 NKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139
>Os05g0460500 Similar to Histone H2B.2
Length = 118
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/41 (97%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 78 NKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 118
>Os08g0490900 Similar to Histone H2B.2
Length = 150
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/41 (97%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 110 NKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
>Os01g0152900 Similar to Histone H2B.1
Length = 153
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/41 (95%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 113 NKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
>Os01g0152300 Similar to Histone H2B.1
Length = 153
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/41 (95%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 113 NKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
>Os05g0574300 Similar to Histone H2B.2
Length = 152
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/41 (95%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 112 NKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 152
>Os01g0153300 Similar to Histone H2B.1
Length = 155
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/41 (95%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 115 NKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 155
>Os01g0149600 Similar to Histone H2B.1
Length = 153
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/41 (95%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 113 NKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
>AK108119
Length = 142
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/41 (82%), Positives = 40/41 (97%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKK TI+SREIQTAVRL+LPGEL+KHA+SEGTK+VTKF+SS
Sbjct: 101 NKKSTISSREIQTAVRLILPGELSKHAISEGTKSVTKFSSS 141
>Os08g0490800
Length = 79
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/36 (91%), Positives = 34/36 (94%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVT 36
NKKPTITSREIQT+VRLVL GELAKHAVSEG KAVT
Sbjct: 16 NKKPTITSREIQTSVRLVLLGELAKHAVSEGAKAVT 51
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.307 0.121 0.311
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 979,456
Number of extensions: 15061
Number of successful extensions: 39
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 12
Length of query: 41
Length of database: 17,035,801
Length adjustment: 15
Effective length of query: 26
Effective length of database: 16,252,591
Effective search space: 422567366
Effective search space used: 422567366
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 149 (62.0 bits)