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Os01g0153300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Histone H2B.1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.7 (0.0199) R2 : 0.568
β1 : 1.13 (0.0729) R2dD : 0.235 R2D : 0.123
β2 : 0.885 (0.0517) R2dC : 0.279 R2C : 0.216
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.514 (0.0425) R2dN8 : 0.187 R2N8 : 0.0629
σ : 0.374
deviance : 63.83
__
_____
C
peak time of C : 17.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.15 0.355 14.7 1.12 1.02 -0.603 -0.518 -0.0711 0.493 19.8 10.27 10 -- --
57.17 0.352 14.7 1.12 1.02 -0.607 -0.567 -- 0.493 19.9 10.06 10 -- --
57.63 0.354 14.7 1.13 1 -0.593 -- -0.29 0.494 19.8 10.65 10 -- --
58.12 0.355 14.7 1.13 1.01 -0.603 -- -- 0.496 19.8 10.66 9 -- --
59.12 0.358 14.7 0.975 -- -1.03 -- 0.402 0.427 -- 0.3 635 -- --
63.66 0.374 14.7 1.13 0.887 -- -0.262 -- 0.516 17.1 -- -- -- --
63.83 0.374 14.7 1.13 0.885 -- -- -- 0.514 17.1 -- -- -- --
59.36 0.359 14.7 1.02 -- -1.04 -- -- 0.445 -- 0.3 639 -- --
91.33 0.445 14.7 -- 0.966 -0.577 -- -- 0.374 19.8 13.35 6 -- --
104.91 0.479 14.7 1.1 -- -- -- -- 0.492 -- -- -- -- --
97.28 0.461 14.7 -- 0.866 -- -- -- 0.389 17.1 -- -- -- --
86.91 0.434 14.7 -- -- -1.09 -- -- 0.375 -- 0.00999 647 -- --
136.54 0.545 14.7 -- -- -- -- -- 0.371 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.66 temperature 25.0 90 < th dose independent rect. 1 20
2 52.70 radiation 1.0 720 > th dose independent rect. 12 5
11 53.73 radiation 20.0 270 < th dose independent rect. 19 13
12 53.86 radiation 10.0 10 < th dose dependent rect. 24 23
15 54.13 radiation 10.0 720 < th dose independent rect. 21 10
17 54.21 precipitation 0.1 270 < th dose independent rect. 3 22
18 54.21 precipitation 0.1 270 < th dose dependent rect. 3 22
19 54.24 temperature 30.0 10 < th dose dependent rect. 1 22
20 54.27 wind 1.0 270 > th dose independent rect. 24 4
22 54.27 temperature 30.0 270 < th dose dependent rect. 1 2
27 54.34 temperature 10.0 10 > th dose dependent rect. 6 20
28 54.35 radiation 40.0 270 < th dose dependent rect. 19 13
29 54.37 temperature 10.0 90 > th dose dependent rect. 6 19
30 54.38 wind 1.0 270 > th dose independent rect. 1 2
34 54.43 radiation 30.0 270 < th dose independent rect. 15 13
37 54.49 temperature 30.0 10 < th dose dependent rect. 1 20
40 54.51 radiation 40.0 43200 < th dose independent rect. 16 8
42 54.53 temperature 10.0 270 > th dose dependent rect. 4 20
45 54.55 radiation 40.0 43200 < th dose independent rect. 16 15
55 54.68 precipitation 0.1 270 < th dose independent rect. 4 20
56 54.68 precipitation 0.1 270 < th dose dependent rect. 4 20
57 54.69 humidity 90.0 720 < th dose independent rect. 8 4
61 54.73 temperature 10.0 270 > th dose independent rect. 4 11
62 54.73 atmosphere 1015.0 270 < th dose independent rect. 4 11
63 54.73 temperature 10.0 270 > th dose independent rect. 15 13
66 54.75 temperature 30.0 270 < th dose dependent rect. 24 4
67 54.76 precipitation 0.1 270 < th dose independent rect. 4 11
69 54.76 precipitation 0.1 270 < th dose dependent rect. 4 11
72 54.78 temperature 15.0 270 > th dose independent rect. 8 11
73 54.79 wind 9.0 270 < th dose independent rect. 4 11
81 54.87 radiation 1.0 270 < th dose dependent rect. 24 19
91 54.94 wind 9.0 270 < th dose independent rect. 3 22
94 54.96 radiation 20.0 720 < th dose dependent rect. 21 10
103 55.01 radiation 1.0 720 > th dose independent rect. 12 18
105 55.02 precipitation 0.1 90 < th dose independent rect. 6 19
106 55.02 precipitation 0.1 90 < th dose dependent rect. 6 19
107 55.03 temperature 15.0 270 > th dose independent rect. 24 12
111 55.04 atmosphere 995.0 270 > th dose independent rect. 15 13
117 55.07 atmosphere 995.0 270 > th dose independent rect. 4 11
127 55.08 wind 7.0 270 < th dose independent rect. 12 12
137 55.12 precipitation 0.1 270 < th dose independent rect. 19 13
138 55.12 radiation 1.0 90 < th dose independent rect. 24 23
139 55.12 precipitation 0.1 270 < th dose dependent rect. 19 13
140 55.13 wind 7.0 270 < th dose independent rect. 4 20
149 55.18 precipitation 0.1 720 < th dose independent rect. 12 12
151 55.18 precipitation 0.1 720 < th dose dependent rect. 12 12
152 55.20 atmosphere 1015.0 720 < th dose independent rect. 24 12
161 55.26 radiation 1.0 90 < th dose dependent sin 1 NA
163 55.27 radiation 40.0 90 < th dose dependent rect. 15 15
166 55.28 radiation 1.0 90 < th dose independent rect. 1 20
169 55.30 precipitation 0.1 270 < th dose independent rect. 1 2
170 55.30 precipitation 0.1 270 < th dose dependent rect. 1 2
173 55.32 wind 7.0 270 < th dose independent rect. 1 2
175 55.32 temperature 10.0 270 > th dose independent rect. 1 2
177 55.32 temperature 30.0 270 < th dose independent rect. 1 2
178 55.32 humidity 50.0 270 > th dose independent rect. 1 2
181 55.32 atmosphere 995.0 270 > th dose independent rect. 1 2
182 55.32 atmosphere 1010.0 270 < th dose independent rect. 1 2
184 55.32 radiation 1.0 270 < th dose independent rect. 1 2
189 55.32 radiation 10.0 720 < th dose independent rect. 5 2
190 55.32 temperature 10.0 270 > th dose independent rect. 3 22
191 55.32 radiation 1.0 270 < th dose dependent rect. 1 2
197 55.33 radiation 1.0 90 < th dose independent rect. 1 18
198 55.34 wind 9.0 43200 < th dose independent rect. 24 1
205 55.34 temperature 10.0 720 > th dose dependent rect. 4 4
208 55.35 precipitation 0.1 720 < th dose independent rect. 24 12
209 55.35 precipitation 0.1 720 < th dose dependent rect. 24 12
212 55.37 temperature 15.0 720 > th dose independent rect. 8 4
218 55.40 atmosphere 1010.0 270 < th dose independent rect. 24 4
224 55.41 wind 7.0 270 < th dose independent rect. 24 4
226 55.41 temperature 10.0 270 > th dose independent rect. 24 4
228 55.41 temperature 30.0 270 < th dose independent rect. 24 4
229 55.41 humidity 50.0 270 > th dose independent rect. 24 4
232 55.41 atmosphere 995.0 270 > th dose independent rect. 24 4
233 55.41 radiation 1.0 270 < th dose independent rect. 24 4
238 55.41 temperature 10.0 270 > th dose independent rect. 4 20
240 55.41 radiation 1.0 270 < th dose dependent rect. 24 4
258 55.48 precipitation 0.1 270 < th dose independent rect. 24 4
259 55.48 precipitation 0.1 270 < th dose dependent rect. 24 4
261 55.49 wind 9.0 270 < th dose independent rect. 15 13
266 55.50 atmosphere 1015.0 270 < th dose independent rect. 8 11
267 55.50 temperature 10.0 270 > th dose independent rect. 19 13
268 55.50 temperature 30.0 270 < th dose independent rect. 19 13
269 55.50 humidity 50.0 270 > th dose independent rect. 19 13
270 55.50 atmosphere 995.0 270 > th dose independent rect. 19 13
274 55.52 wind 9.0 270 < th dose independent rect. 19 13
280 55.53 wind 9.0 90 < th dose independent rect. 6 19
283 55.54 radiation 40.0 90 < th dose independent rect. 6 19
286 55.54 temperature 30.0 10 < th dose dependent rect. 1 6
288 55.55 humidity 50.0 270 > th dose independent rect. 4 11
300 55.59 radiation 40.0 10 < th dose independent rect. 7 18
305 55.60 humidity 90.0 270 < th dose independent rect. 20 2
315 55.62 radiation 1.0 10 > th dose independent rect. 6 10
320 55.63 humidity 50.0 270 > th dose dependent rect. 1 2
326 55.64 radiation 30.0 30 < th dose dependent rect. 13 17
336 55.66 radiation 20.0 10 < th dose dependent rect. 16 15
345 55.70 radiation 1.0 720 > th dose independent rect. 7 5
353 55.72 radiation 40.0 720 < th dose dependent rect. 4 4
355 55.73 atmosphere 995.0 270 > th dose dependent rect. 24 4
371 55.74 temperature 10.0 90 > th dose independent rect. 6 19
373 55.74 temperature 10.0 720 > th dose dependent rect. 12 4
410 55.83 humidity 50.0 270 > th dose dependent rect. 24 4
417 55.84 wind 1.0 270 > th dose independent rect. 8 11
434 55.85 atmosphere 995.0 270 > th dose independent rect. 8 11
462 55.89 temperature 25.0 720 < th dose independent rect. 9 2
464 55.89 atmosphere 1015.0 720 < th dose independent rect. 16 20
475 55.92 radiation 1.0 90 < th dose independent sin 2 NA
476 55.92 radiation 30.0 720 < th dose independent rect. 15 5
477 55.92 atmosphere 1015.0 270 < th dose independent rect. 14 14
482 55.93 humidity 50.0 720 > th dose dependent rect. 4 4
488 55.94 radiation 1.0 720 < th dose dependent rect. 14 6
496 55.96 humidity 80.0 720 < th dose independent rect. 12 1
506 55.97 precipitation 0.1 270 < th dose independent rect. 8 11
509 55.97 precipitation 0.1 270 < th dose dependent rect. 8 11
510 55.97 wind 9.0 270 < th dose dependent rect. 12 12
535 55.99 humidity 90.0 270 < th dose independent rect. 19 5
547 56.01 atmosphere 995.0 270 > th dose dependent rect. 1 2
556 56.03 radiation 20.0 10 < th dose dependent rect. 10 20
563 56.05 wind 9.0 270 < th dose independent rect. 24 11
569 56.05 temperature 10.0 270 > th dose dependent rect. 4 10
580 56.07 radiation 1.0 90 > th dose independent sin 2 NA
605 56.09 radiation 10.0 14400 < th dose dependent rect. 24 1
611 56.10 precipitation 0.1 720 < th dose independent rect. 12 4
613 56.10 precipitation 0.1 720 < th dose dependent rect. 12 4
620 56.12 radiation 40.0 90 < th dose independent rect. 6 9
622 56.12 humidity 50.0 270 > th dose independent rect. 24 11
625 56.12 wind 1.0 270 > th dose independent rect. 14 14
629 56.12 temperature 10.0 10 > th dose dependent rect. 6 10
635 56.13 atmosphere 995.0 270 > th dose independent rect. 24 11
636 56.13 temperature 10.0 270 > th dose independent rect. 11 13
659 56.17 radiation 20.0 10 < th dose dependent rect. 2 5
669 56.20 wind 9.0 720 < th dose independent rect. 12 4
688 56.22 radiation 10.0 720 < th dose dependent rect. 5 2
693 56.23 precipitation 0.1 720 < th dose independent rect. 20 4
694 56.23 precipitation 0.1 720 < th dose dependent rect. 20 4
698 56.24 radiation 40.0 720 < th dose dependent rect. 16 4
704 56.25 humidity 50.0 90 > th dose dependent rect. 6 19
706 56.26 temperature 15.0 720 > th dose independent rect. 12 4
715 56.27 radiation 40.0 43200 < th dose independent rect. 16 3
769 56.30 radiation 40.0 270 < th dose independent rect. 4 20
803 56.33 wind 1.0 720 > th dose independent rect. 8 4
814 56.35 temperature 20.0 720 > th dose independent rect. 4 2
825 56.36 humidity 90.0 720 < th dose dependent rect. 12 1
841 56.38 wind 9.0 270 < th dose dependent rect. 1 2
842 56.38 wind 9.0 90 < th dose dependent rect. 1 5
849 56.39 radiation 1.0 720 < th dose independent rect. 14 14
858 56.40 atmosphere 1015.0 720 < th dose independent rect. 12 4
861 56.40 wind 1.0 270 > th dose independent rect. 4 20
862 56.40 temperature 10.0 720 > th dose independent rect. 16 20
870 56.41 precipitation 0.1 720 < th dose independent rect. 8 4
873 56.41 temperature 15.0 270 > th dose independent rect. 24 19
874 56.41 precipitation 0.1 720 < th dose dependent rect. 8 4
879 56.42 wind 9.0 720 < th dose independent rect. 8 4
881 56.42 radiation 1.0 720 < th dose independent rect. 15 12
883 56.42 humidity 60.0 90 > th dose independent rect. 6 19
884 56.42 atmosphere 995.0 720 > th dose independent rect. 16 20
887 56.42 humidity 50.0 90 > th dose dependent rect. 6 9
895 56.43 atmosphere 1015.0 720 < th dose independent rect. 24 20
903 56.44 wind 9.0 43200 > th dose dependent rect. 11 1
905 56.44 temperature 10.0 90 > th dose dependent rect. 6 10
913 56.45 temperature 10.0 720 > th dose dependent rect. 12 1
917 56.45 radiation 30.0 720 < th dose dependent rect. 16 11
924 56.46 temperature 25.0 720 > th dose independent rect. 3 13
930 56.46 radiation 1.0 720 < th dose dependent rect. 15 12
943 56.48 temperature 10.0 720 > th dose independent rect. 20 4
944 56.48 temperature 30.0 720 < th dose independent rect. 20 4
945 56.48 humidity 50.0 720 > th dose independent rect. 20 4
948 56.48 atmosphere 995.0 720 > th dose independent rect. 20 4
949 56.48 radiation 1.0 720 < th dose independent rect. 20 4
965 56.48 radiation 1.0 720 < th dose dependent rect. 20 4