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Os01g0152300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Histone H2B.1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.4 (0.0217) R2 : 0.581
β1 : 1.16 (0.0793) R2dD : 0.203 R2D : 0.124
β2 : 0.976 (0.0529) R2dC : 0.315 R2C : 0.279
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.526 (0.0462) R2dN8 : 0.16 R2N8 : 0.0601
σ : 0.407
deviance : 75.56
__
_____
C
peak time of C : 21.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.02 0.361 13.4 1.19 1.03 0.73 -0.902 -0.671 0.656 21.1 29.66 1878 -- --
59.69 0.36 13.4 1.18 1.03 0.726 -0.865 -- 0.654 21.1 29.5 1878 -- --
61.86 0.366 13.4 1.22 1.04 0.728 -- -0.638 0.657 21 29.61 1878 -- --
62.4 0.368 13.4 1.18 1.03 0.728 -- -- 0.65 21.1 29.62 1868 -- --
118.21 0.506 13.3 1.19 -- 0.691 -- -0.391 0.672 -- 29.69 1673 -- --
72.27 0.399 13.4 1.12 0.97 -- -0.936 -- 0.524 21.7 -- -- -- --
75.56 0.407 13.4 1.16 0.976 -- -- -- 0.526 21.6 -- -- -- --
118.72 0.507 13.3 1.22 -- 0.672 -- -- 0.664 -- 29.67 1677 -- --
84.42 0.428 13.4 -- 1.07 0.882 -- -- 0.55 21.4 30 29323 -- --
132.02 0.537 13.4 1.17 -- -- -- -- 0.524 -- -- -- -- --
110.88 0.493 13.4 -- 0.979 -- -- -- 0.397 21.7 -- -- -- --
141.77 0.555 13.3 -- -- 0.8 -- -- 0.522 -- 30 29074 -- --
167.85 0.605 13.4 -- -- -- -- -- 0.395 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.27 radiation 40.0 270 < th dose dependent rect. 6 18
4 57.70 radiation 30.0 270 < th dose independent rect. 6 18
7 57.85 radiation 40.0 270 < th dose independent rect. 5 8
11 58.05 radiation 10.0 270 < th dose independent rect. 6 18
21 58.28 temperature 10.0 270 > th dose dependent rect. 17 7
26 58.52 atmosphere 1000.0 90 > th dose independent rect. 6 8
40 58.69 radiation 20.0 14400 > th dose independent rect. 7 1
45 58.79 wind 1.0 270 > th dose independent rect. 13 15
51 58.89 radiation 10.0 14400 > th dose independent rect. 17 14
80 59.12 radiation 40.0 270 < th dose independent rect. 18 17
90 59.19 radiation 40.0 270 < th dose independent rect. 17 20
91 59.20 radiation 10.0 270 < th dose independent rect. 9 15
93 59.22 radiation 10.0 270 < th dose independent rect. 14 10
99 59.25 temperature 15.0 270 > th dose independent rect. 17 7
122 59.36 radiation 40.0 270 < th dose dependent rect. 6 7
128 59.41 temperature 10.0 270 > th dose independent rect. 5 8
130 59.41 atmosphere 1015.0 270 < th dose independent rect. 5 8
131 59.41 temperature 10.0 270 > th dose independent rect. 13 16
137 59.51 precipitation 0.1 270 < th dose independent rect. 5 8
139 59.51 precipitation 0.1 270 < th dose dependent rect. 5 8
143 59.56 wind 9.0 270 < th dose independent rect. 5 8
144 59.58 atmosphere 1000.0 10 > th dose independent rect. 7 7
151 59.61 wind 9.0 270 < th dose independent rect. 13 16
163 59.73 precipitation 0.1 270 < th dose independent rect. 13 16
164 59.73 precipitation 0.1 270 < th dose dependent rect. 13 16
165 59.74 humidity 80.0 43200 > th dose independent rect. 8 1
168 59.77 radiation 10.0 270 < th dose independent sin 18 NA
175 59.80 wind 1.0 270 > th dose independent rect. 10 8
176 59.81 wind 5.0 270 < th dose independent rect. 23 7
199 59.96 humidity 50.0 270 > th dose independent rect. 5 8
200 59.96 humidity 50.0 270 > th dose dependent rect. 6 17
203 59.99 radiation 40.0 270 < th dose dependent rect. 18 17
205 60.02 humidity 70.0 270 > th dose independent rect. 6 17
208 60.02 radiation 10.0 1440 < th dose independent rect. 14 19
209 60.03 wind 1.0 270 > th dose independent rect. 23 7
236 60.15 humidity 80.0 43200 > th dose independent rect. 7 3
237 60.15 radiation 10.0 43200 > th dose independent rect. 17 20
238 60.16 wind 1.0 43200 > th dose independent rect. 4 3
240 60.17 wind 1.0 43200 < th dose independent rect. 4 3
241 60.17 radiation 10.0 43200 > th dose independent rect. 6 7
243 60.17 humidity 50.0 43200 > th dose dependent rect. 8 1
245 60.18 temperature 10.0 270 > th dose dependent rect. 18 16
273 60.24 precipitation 0.1 270 < th dose independent rect. 23 7
275 60.24 precipitation 0.1 270 < th dose dependent rect. 23 7
295 60.28 radiation 40.0 90 < th dose independent rect. 14 16
296 60.28 humidity 50.0 270 > th dose dependent rect. 6 7
298 60.30 temperature 20.0 270 > th dose independent rect. 18 5
301 60.31 humidity 80.0 43200 < th dose independent rect. 8 2
307 60.33 radiation 10.0 43200 > th dose independent sin 5 NA
308 60.33 humidity 70.0 43200 > th dose independent rect. 18 1
314 60.33 temperature 10.0 270 > th dose independent rect. 23 7
315 60.33 temperature 30.0 270 < th dose independent rect. 23 7
316 60.33 humidity 50.0 270 > th dose independent rect. 23 7
320 60.33 atmosphere 995.0 270 > th dose independent rect. 23 7
323 60.33 radiation 20.0 270 < th dose independent rect. 23 7
335 60.33 temperature 10.0 270 > th dose independent rect. 6 17
341 60.34 atmosphere 995.0 270 > th dose independent rect. 6 17
346 60.35 wind 1.0 43200 < th dose dependent rect. 4 3
368 60.38 radiation 1.0 90 > th dose independent rect. 6 8
375 60.40 radiation 10.0 1440 < th dose independent sin 13 NA
379 60.40 wind 9.0 43200 < th dose dependent rect. 4 2
386 60.43 radiation 20.0 4320 < th dose independent rect. 8 1
392 60.43 radiation 40.0 270 < th dose dependent rect. 23 7
414 60.46 radiation 30.0 270 < th dose dependent rect. 16 9
421 60.47 temperature 15.0 270 > th dose independent rect. 1 16
451 60.50 precipitation 0.1 270 < th dose independent rect. 6 17
460 60.50 precipitation 0.1 270 < th dose dependent rect. 6 17
461 60.51 atmosphere 995.0 270 > th dose independent rect. 17 8
472 60.53 wind 9.0 270 < th dose independent rect. 6 17
474 60.53 radiation 20.0 1440 < th dose independent rect. 19 18
478 60.54 radiation 20.0 1440 < th dose independent rect. 21 16
482 60.55 radiation 20.0 1440 < th dose independent rect. 6 7
483 60.55 radiation 20.0 1440 < th dose independent rect. 23 14
494 60.56 humidity 50.0 270 > th dose independent rect. 17 8
497 60.56 radiation 20.0 4320 < th dose independent rect. 19 14
502 60.57 radiation 20.0 4320 < th dose independent rect. 6 3
507 60.57 radiation 20.0 4320 < th dose independent rect. 21 12
510 60.57 radiation 10.0 270 < th dose dependent sin 19 NA
511 60.58 humidity 70.0 43200 < th dose independent rect. 18 1
516 60.58 precipitation 0.1 270 < th dose independent rect. 1 16
521 60.58 precipitation 0.1 270 < th dose dependent rect. 1 16
526 60.59 radiation 20.0 1440 < th dose independent rect. 16 21
529 60.60 humidity 70.0 43200 < th dose independent rect. 17 16
537 60.61 humidity 70.0 43200 < th dose independent rect. 17 8
557 60.64 atmosphere 1015.0 270 < th dose independent rect. 1 16
560 60.65 radiation 20.0 1440 < th dose independent sin 7 NA
571 60.66 wind 1.0 43200 > th dose dependent rect. 4 2
579 60.68 radiation 20.0 43200 > th dose independent rect. 13 1
582 60.68 wind 9.0 43200 > th dose dependent rect. 21 1
588 60.69 wind 9.0 270 < th dose independent rect. 17 8
589 60.69 wind 1.0 270 > th dose independent rect. 24 17
609 60.72 atmosphere 1015.0 270 < th dose independent rect. 23 7
617 60.73 wind 9.0 270 < th dose independent rect. 1 16
627 60.75 humidity 80.0 43200 > th dose independent rect. 6 5
651 60.77 atmosphere 1015.0 270 < th dose independent rect. 6 17
657 60.78 precipitation 0.1 270 < th dose independent rect. 17 8
663 60.78 precipitation 0.1 270 < th dose dependent rect. 17 8
670 60.79 atmosphere 1000.0 10 > th dose independent rect. 7 17
694 60.81 wind 3.0 270 > th dose independent rect. 12 5
695 60.81 temperature 15.0 270 > th dose independent rect. 10 8
699 60.81 atmosphere 1000.0 90 > th dose independent rect. 6 21
701 60.81 humidity 90.0 43200 < th dose dependent rect. 9 1
705 60.82 wind 9.0 43200 > th dose independent rect. 21 2
734 60.85 wind 7.0 43200 < th dose independent rect. 11 1
738 60.86 wind 7.0 43200 < th dose independent rect. 21 1
761 60.87 radiation 10.0 43200 > th dose independent rect. 12 23
762 60.88 radiation 10.0 43200 > th dose independent no NA NA
863 60.92 temperature 20.0 14400 > th dose dependent rect. 9 1
868 60.93 radiation 10.0 43200 > th dose independent rect. 10 23
874 60.94 radiation 1.0 10 > th dose independent rect. 6 8
900 60.97 radiation 10.0 4320 < th dose dependent rect. 7 1
909 60.98 humidity 50.0 270 > th dose independent rect. 6 17
918 60.99 radiation 20.0 14400 > th dose dependent rect. 7 1
939 61.01 humidity 80.0 43200 < th dose independent rect. 6 5
953 61.02 radiation 40.0 270 < th dose dependent sin 17 NA
965 61.03 wind 5.0 43200 > th dose dependent rect. 11 1
972 61.04 humidity 70.0 43200 > th dose dependent rect. 19 2
973 61.04 wind 1.0 90 > th dose dependent rect. 13 7
977 61.05 precipitation 0.1 43200 < th dose independent rect. 18 2
984 61.05 precipitation 0.1 43200 < th dose dependent rect. 18 2
988 61.06 wind 1.0 43200 > th dose independent rect. 5 1
992 61.06 radiation 1.0 270 > th dose dependent sin 17 NA