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Os01g0839500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Histone H2B family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.2 (0.0219) R2 : 0.66
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.68 (0.0564) R2dC : 0.662 R2C : 0.658
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0724 (0.0461) R2dN8 : 0.00237 R2N8 : -0.00129
σ : 0.413
deviance : 78
__
_____
C
peak time of C : 19.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.95 0.372 13.2 0.142 1.72 0.116 -0.831 1.21 -0.0448 19.8 20 10 -- --
67.95 0.384 13.2 0.121 1.69 0.229 -1.22 -- -0.0344 20 18.59 3 -- --
63.96 0.375 13.2 0.164 1.74 0.142 -- 1.52 -0.0439 19.9 20 10 -- --
73.82 0.4 13.2 0.17 1.75 0.261 -- -- -0.0391 20 18.54 3 -- --
173.23 0.616 13.1 0.262 -- -0.657 -- 0.958 -0.0181 -- 0.03707 6 -- --
70.78 0.394 13.2 0.172 1.68 -- -1.47 -- -0.0478 19.7 -- -- -- --
76.83 0.41 13.2 0.211 1.68 -- -- -- -0.049 19.6 -- -- -- --
179.46 0.627 13.1 0.225 -- -0.657 -- -- -0.0302 -- 0.03707 6 -- --
74.8 0.403 13.2 -- 1.77 0.284 -- -- -0.0615 20.1 18.3 3 -- --
228.09 0.706 13.1 0.187 -- -- -- -- -0.0743 -- -- -- -- --
78 0.413 13.2 -- 1.68 -- -- -- -0.0724 19.6 -- -- -- --
180.8 0.628 13.1 -- -- -0.654 -- -- -0.0553 -- 0.03911 6 -- --
229.01 0.706 13.1 -- -- -- -- -- -0.095 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.73 temperature 15.0 1440 > th dose independent rect. 7 8
3 57.76 humidity 50.0 90 > th dose dependent rect. 6 7
4 57.80 radiation 1.0 10 > th dose independent rect. 6 8
6 57.91 temperature 15.0 10 > th dose independent rect. 14 16
7 57.92 temperature 15.0 90 > th dose independent rect. 5 23
9 57.98 precipitation 0.1 10 < th dose independent rect. 6 8
10 57.98 precipitation 0.1 10 < th dose dependent rect. 6 8
11 58.03 wind 9.0 10 < th dose independent rect. 14 16
13 58.06 temperature 10.0 10 > th dose independent rect. 6 8
15 58.06 atmosphere 995.0 10 > th dose independent rect. 6 8
16 58.06 atmosphere 1015.0 10 < th dose independent rect. 6 8
19 58.10 radiation 40.0 10 < th dose independent rect. 14 16
22 58.17 wind 9.0 30 < th dose independent rect. 6 8
38 58.26 temperature 10.0 1440 > th dose independent rect. 15 16
46 58.31 atmosphere 1010.0 10 < th dose independent rect. 14 16
52 58.41 wind 5.0 90 < th dose dependent rect. 3 3
65 58.49 temperature 10.0 90 > th dose dependent rect. 3 3
93 58.76 precipitation 0.1 10 < th dose independent rect. 14 16
94 58.76 temperature 10.0 10 > th dose dependent rect. 4 2
95 58.76 precipitation 0.1 10 < th dose dependent rect. 14 16
96 58.80 wind 3.0 90 < th dose independent rect. 3 3
103 58.82 atmosphere 995.0 10 > th dose independent rect. 14 16
105 58.83 atmosphere 1015.0 1440 < th dose independent rect. 3 4
107 58.84 radiation 30.0 10 < th dose independent rect. 12 18
109 58.85 wind 7.0 90 < th dose independent rect. 6 21
111 58.87 radiation 10.0 10 < th dose independent rect. 4 2
124 58.98 humidity 50.0 90 > th dose dependent rect. 3 3
132 59.05 wind 7.0 10 < th dose independent rect. 6 22
133 59.05 wind 9.0 10 < th dose dependent rect. 4 2
134 59.05 humidity 50.0 10 > th dose dependent rect. 6 8
135 59.05 humidity 50.0 10 > th dose dependent rect. 6 22
141 59.08 wind 5.0 10 < th dose independent rect. 4 2
147 59.14 radiation 10.0 90 < th dose independent rect. 3 3
153 59.16 temperature 15.0 90 > th dose independent rect. 6 21
158 59.19 temperature 10.0 10 > th dose independent rect. 4 2
160 59.19 temperature 30.0 10 < th dose independent rect. 4 2
161 59.19 humidity 50.0 10 > th dose independent rect. 4 2
164 59.19 atmosphere 995.0 10 > th dose independent rect. 4 2
165 59.19 atmosphere 1010.0 10 < th dose independent rect. 4 2
170 59.19 temperature 10.0 10 > th dose independent rect. 6 22
171 59.19 wind 9.0 30 < th dose dependent rect. 6 8
172 59.20 humidity 50.0 10 > th dose dependent rect. 4 2
175 59.21 temperature 10.0 90 > th dose independent rect. 3 3
177 59.21 temperature 30.0 90 < th dose independent rect. 3 3
178 59.21 humidity 50.0 90 > th dose independent rect. 3 3
181 59.21 atmosphere 995.0 90 > th dose independent rect. 3 3
182 59.21 atmosphere 1010.0 90 < th dose independent rect. 3 3
190 59.22 precipitation 0.1 10 < th dose independent rect. 4 2
192 59.22 precipitation 0.1 10 < th dose dependent rect. 4 2
194 59.23 precipitation 0.1 90 < th dose independent rect. 3 3
195 59.23 radiation 30.0 90 < th dose dependent rect. 3 3
197 59.23 precipitation 0.1 90 < th dose dependent rect. 3 3
213 59.31 precipitation 0.1 10 < th dose independent rect. 6 22
214 59.31 precipitation 0.1 10 < th dose dependent rect. 6 22
220 59.36 wind 9.0 90 < th dose independent rect. 5 23
221 59.36 radiation 40.0 10 < th dose dependent rect. 4 2
223 59.36 temperature 10.0 10 > th dose dependent rect. 14 16
228 59.39 temperature 10.0 270 > th dose dependent rect. 1 4
241 59.44 humidity 50.0 10 > th dose independent rect. 14 16
251 59.47 atmosphere 1015.0 90 < th dose dependent rect. 4 1
258 59.49 temperature 10.0 10 > th dose dependent rect. 6 8
261 59.50 humidity 50.0 90 > th dose dependent rect. 4 1
268 59.52 temperature 10.0 90 > th dose independent rect. 4 1
270 59.52 temperature 30.0 90 < th dose independent rect. 4 1
271 59.52 humidity 50.0 90 > th dose independent rect. 4 1
274 59.52 atmosphere 995.0 90 > th dose independent rect. 4 1
275 59.52 atmosphere 1010.0 90 < th dose independent rect. 4 1
285 59.53 precipitation 0.1 90 < th dose independent rect. 4 1
287 59.53 radiation 20.0 90 < th dose dependent rect. 4 1
290 59.53 precipitation 0.1 90 < th dose dependent rect. 4 1
318 59.69 precipitation 0.1 90 < th dose independent rect. 6 21
319 59.69 precipitation 0.1 90 < th dose dependent rect. 6 21
366 59.91 atmosphere 1015.0 10 < th dose dependent rect. 4 2
372 59.93 atmosphere 995.0 10 > th dose independent rect. 6 22
377 59.97 radiation 40.0 90 > th dose independent rect. 15 1
394 59.97 radiation 40.0 90 > th dose dependent rect. 15 1
413 59.98 atmosphere 995.0 90 > th dose independent rect. 6 21
418 60.00 humidity 50.0 270 > th dose dependent rect. 1 4
421 60.01 temperature 15.0 270 > th dose independent rect. 3 23
450 60.13 humidity 60.0 14400 > th dose independent rect. 3 4
454 60.13 radiation 40.0 10 < th dose dependent rect. 14 16
461 60.16 atmosphere 995.0 10 > th dose dependent rect. 4 2
473 60.20 temperature 20.0 270 > th dose independent rect. 1 4
476 60.21 temperature 10.0 270 > th dose independent rect. 1 4
478 60.21 temperature 30.0 270 < th dose independent rect. 1 4
479 60.21 humidity 50.0 270 > th dose independent rect. 1 4
482 60.21 atmosphere 995.0 270 > th dose independent rect. 1 4
483 60.21 atmosphere 1010.0 270 < th dose independent rect. 1 4
485 60.21 radiation 1.0 270 < th dose independent rect. 1 4
490 60.21 wind 1.0 10 > th dose independent rect. 6 8
494 60.21 radiation 10.0 270 < th dose dependent rect. 1 4
506 60.24 temperature 15.0 270 > th dose dependent rect. 2 1
509 60.26 precipitation 0.1 270 < th dose independent rect. 1 4
510 60.26 precipitation 0.1 270 < th dose dependent rect. 1 4
546 60.30 humidity 90.0 10 < th dose independent rect. 6 8
592 60.38 wind 9.0 90 < th dose dependent rect. 6 21
605 60.41 atmosphere 1015.0 90 < th dose dependent rect. 3 3
618 60.44 radiation 40.0 1440 < th dose independent rect. 16 15
681 60.50 wind 9.0 30 < th dose dependent rect. 14 16
683 60.51 humidity 50.0 10 > th dose independent rect. 6 8
686 60.51 atmosphere 995.0 90 > th dose dependent rect. 4 1
713 60.55 humidity 70.0 1440 > th dose independent rect. 3 4
720 60.55 radiation 20.0 90 < th dose dependent rect. 6 21
729 60.60 wind 9.0 1440 < th dose independent rect. 3 4
730 60.60 temperature 10.0 1440 > th dose independent rect. 3 4
733 60.60 temperature 30.0 1440 < th dose independent rect. 3 4
738 60.60 humidity 50.0 1440 > th dose independent rect. 3 4
743 60.60 atmosphere 995.0 1440 > th dose independent rect. 3 4
744 60.60 radiation 40.0 1440 < th dose independent rect. 3 4
749 60.60 temperature 10.0 1440 > th dose independent rect. 7 20
757 60.61 temperature 30.0 90 < th dose dependent rect. 4 1
764 60.64 temperature 15.0 270 > th dose independent rect. 1 14
773 60.66 radiation 20.0 4320 < th dose independent rect. 4 2
780 60.67 humidity 60.0 270 > th dose dependent rect. 2 1
799 60.70 radiation 1.0 270 < th dose dependent rect. 1 10
827 60.75 radiation 10.0 90 < th dose dependent rect. 3 8
829 60.76 radiation 1.0 90 < th dose independent rect. 3 12
830 60.76 radiation 1.0 90 > th dose independent rect. 18 20
843 60.79 wind 5.0 270 < th dose independent rect. 2 1
848 60.79 temperature 30.0 90 < th dose independent rect. 6 8
849 60.79 radiation 1.0 90 < th dose independent rect. 3 8
884 60.81 wind 9.0 10 < th dose dependent rect. 6 22
892 60.82 radiation 10.0 90 < th dose dependent rect. 3 10
893 60.83 humidity 90.0 90 > th dose independent rect. 3 9
942 60.89 temperature 20.0 270 > th dose independent rect. 2 1
980 60.93 humidity 80.0 90 > th dose independent rect. 6 6
981 60.93 humidity 50.0 90 > th dose independent rect. 6 8